| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034139 |
| Family | CE8 |
| Protein Properties | Length: 560 Molecular Weight: 61402.1 Isoelectric Point: 9.6327 |
| Chromosome | Chromosome/Scaffold: 01 Start: 27257766 End: 27260161 |
| Description | root hair specific 12 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 253 | 544 | 0 |
| NIVVAKDGSGKYKTISRALKDVPEKSDKRTVIYVKKGVYFENVKVEKTMWNVVVVGDGESKSIVSGKLNVIDGTPTFQSATFAVFGKGFMARDMGFINTA GPSKHQAVALMVSADLAAFYRCTMNAYQDTLYVHAQRQFYRECTIIGTVDFIFGNAASVLQNCKILPRRPMKGQQNTITAQGRKDPNQNTGISIHRCSIS PLGNLTGVQTFLGRPWKDFSTTVIMESSLNGFIDPKGWLPWVGDSAPDTIFYGEYKNTGAGASTKNRVKWKGLRFLSTKEANRFTVKPFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 560 Download |
| MSSSYGKVDE REHVTLEARR KSRKRITIIV VSLLVLVGIV IGAVFGTMAN KKSTTVETND 60 NGDSISVSVK AVCDVTLHKD KCFETVGSAP NASSLNPEQL FIYAVKITIA EATKALNAFS 120 SSGDNTTMHA CVELLDLTID NLENTLTSSQ NGDVTLPELV SDLRTWLSSA ETYQDTCIET 180 LAESNHPDSK TFGESQLKNA TELTSNALAI ITWLGKIADS FKLRRRLLSA DVAVDFNVGR 240 RLLQSTDLRR VANIVVAKDG SGKYKTISRA LKDVPEKSDK RTVIYVKKGV YFENVKVEKT 300 MWNVVVVGDG ESKSIVSGKL NVIDGTPTFQ SATFAVFGKG FMARDMGFIN TAGPSKHQAV 360 ALMVSADLAA FYRCTMNAYQ DTLYVHAQRQ FYRECTIIGT VDFIFGNAAS VLQNCKILPR 420 RPMKGQQNTI TAQGRKDPNQ NTGISIHRCS ISPLGNLTGV QTFLGRPWKD FSTTVIMESS 480 LNGFIDPKGW LPWVGDSAPD TIFYGEYKNT GAGASTKNRV KWKGLRFLST KEANRFTVKP 540 FIDGERWLPT AKVPFRSGL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 3.0e-155 | 68 | 559 | 517 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 1.0e-157 | 5 | 559 | 596 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02468 | PLN02468 | 0 | 2 | 559 | 571 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02314 | PLN02314 | 0 | 4 | 559 | 585 | + pectinesterase | ||
| pfam01095 | Pectinesterase | 0 | 253 | 545 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO42295.1 | 0 | 3 | 557 | 2 | 562 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_187682.1 | 0 | 1 | 559 | 1 | 561 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_196115.1 | 0 | 3 | 557 | 2 | 562 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002316458.1 | 0 | 1 | 559 | 1 | 569 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515781.1 | 0 | 1 | 559 | 1 | 573 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 253 | 559 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 251 | 559 | 2 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-18 | 253 | 550 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-18 | 253 | 550 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-18 | 253 | 550 | 5 | 340 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
