| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034140 |
| Family | CE8 |
| Protein Properties | Length: 614 Molecular Weight: 67031.5 Isoelectric Point: 8.7204 |
| Chromosome | Chromosome/Scaffold: 01 Start: 27253823 End: 27256519 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 297 | 592 | 0 |
| VIVGPYKSDNFTTITDAIAAAPNNARPEDGYFVIYAREGVYEEYIVVPINKKNLLLMGDGINKTIITGNHNVVDGWTTYNCSSFAVTGERFMAVDVTFRN TAGPEKHQAVALRNNAEGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIYARKPMAKQKNAITAHGRTEPNQNTGISIINCT IKAAPDLAADPTSTMTFLGRPWKPYSRTVFMQSYISDIVQPVGWLEWNGTTGLDTIYYGEYDNFGPGAKTDRRVQWLGYNLLDMAQAMNFTVYNFT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 614 Download |
| MKTLHFSSSL LFLSVLFLSC AFLISPQAPS PSPSELSSQP PSLPPSQSPS LPPSQPPSLP 60 PSKPPSLPPS QSTSDACKST PYPKLCRTIL SAVKSSPSDP YSYGKFTIKQ CLKQASRLSK 120 VINGYVRRVR SKPGSMTAEE IGAVADCGEL AELSVSYLET VAAELKMADM MTAALVEHVN 180 SLLSGVVTNQ QTCLDGLVEA KSGFAAAIGS PMGNLTRLYS VSLGLVSHAL NRNLKRFKAS 240 KGKILGGRNS TYREPLETLI KVLRKTCDND KDCRKAARKL GELGVTSGGS ILVSQAVIVG 300 PYKSDNFTTI TDAIAAAPNN ARPEDGYFVI YAREGVYEEY IVVPINKKNL LLMGDGINKT 360 IITGNHNVVD GWTTYNCSSF AVTGERFMAV DVTFRNTAGP EKHQAVALRN NAEGSTFYRC 420 SFEGYQDTLY VHSLRQFYRE CDIYGTIDFI FGNAAAIFQN CNIYARKPMA KQKNAITAHG 480 RTEPNQNTGI SIINCTIKAA PDLAADPTST MTFLGRPWKP YSRTVFMQSY ISDIVQPVGW 540 LEWNGTTGLD TIYYGEYDNF GPGAKTDRRV QWLGYNLLDM AQAMNFTVYN FTLGDTWLPQ 600 TDIPFYGGLV RKE* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 3.0e-145 | 143 | 610 | 472 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02416 | PLN02416 | 7.0e-147 | 77 | 609 | 539 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 74 | 610 | 537 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| PLN02713 | PLN02713 | 0 | 74 | 610 | 546 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 297 | 595 | 300 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF19577.1 | 0 | 1 | 613 | 1 | 617 | AC011708_20 putative pectinesterase [Arabidopsis thaliana] |
| DDBJ | BAH20370.1 | 0 | 164 | 613 | 1 | 450 | AT3G10720 [Arabidopsis thaliana] |
| RefSeq | NP_187683.2 | 0 | 1 | 613 | 3 | 619 | pectinesterase, putative [Arabidopsis thaliana] |
| RefSeq | NP_196116.1 | 0 | 67 | 613 | 82 | 624 | pectinesterase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002515774.1 | 0 | 76 | 610 | 35 | 568 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 297 | 609 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 292 | 609 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 1e-25 | 307 | 599 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-25 | 307 | 599 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-25 | 307 | 599 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
