CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra034141
FamilyGH51
Protein PropertiesLength: 675 Molecular Weight: 74482.9 Isoelectric Point: 5.2278
ChromosomeChromosome/Scaffold: 01 Start: 27248684 End: 27252293
Descriptionalpha-L-arabinofuranosidase 1
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH512246590
  TTKKGSIWIDQVSAMPVDTYKGHGFRNDLYQMMSDIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQLAEDIGA
  APIWVFNNGISHNDEVETATIMPFVQEALDGIEFARGDANSTWGSVRAAMGREEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIKIISNCDGS
  SRPLDHPAEYYDFHIYTSASNLFSMYHQFDRTSRKGPKAFVSEYAVTGKDAGKGSLLAALAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVF
  NSSHLYGTPSYWVQRFFAESSGSTLLTSTLKGNSSSLVASAITWKNNEQDYIRIKAVNFGATSVNMKVLVTGLDPNVMKVSGSKKTVLTSTNVMDENSFT
  QPEKVAPHESLLEMAEEDLTVILPPHSFSSFDLLKE
Full Sequence
Protein Sequence     Length: 675     Download
MDTESWKFLR SVCLLSFLLG SCFVYQSLRV VVAQDEGTEP AVTLQVNASN GAGRLIPETL    60
FGIFFEEINH AGAGGLWAEL VSNRGFEAGG QNTPSNIWPW SIVGDHSSIY VATDRSSCFE    120
RNKIALRMDV LCGNKGCPPG GVGVYNPGYW GMNIEEGKKY KVALYVRSTG DIDMSVSLAS    180
SNGSLTLASE KIIASASDVS KWTKKEVVLE AKGTDHGARL QLTTTKKGSI WIDQVSAMPV    240
DTYKGHGFRN DLYQMMSDIK PRFIRFPGGC FVEGEWLSNA FRWKETVGPW EERPGHFGDV    300
WKYWTDDGLG HFEFFQLAED IGAAPIWVFN NGISHNDEVE TATIMPFVQE ALDGIEFARG    360
DANSTWGSVR AAMGREEPFE LKYVAIGNED CGKTYYRGNY IVFYDAIKKA YPDIKIISNC    420
DGSSRPLDHP AEYYDFHIYT SASNLFSMYH QFDRTSRKGP KAFVSEYAVT GKDAGKGSLL    480
AALAEAAFLI GLEKNSDIVE MASYAPLFVN TNDRRWNPDA IVFNSSHLYG TPSYWVQRFF    540
AESSGSTLLT STLKGNSSSL VASAITWKNN EQDYIRIKAV NFGATSVNMK VLVTGLDPNV    600
MKVSGSKKTV LTSTNVMDEN SFTQPEKVAP HESLLEMAEE DLTVILPPHS FSSFDLLKES    660
AKIRMTVSDS SSTL* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
pfam06964Alpha-L-AF_C6.0e-30493650168+
COG3534AbfA3.0e-31247392146+
smart00813Alpha-L-AF_C1.0e-37493650166+
Gene Ontology
GO TermDescription
GO:0046373L-arabinose metabolic process
GO:0046556alpha-N-arabinofuranosidase activity
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
GenBankAAK50089.1016721671AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana]
GenBankAAO92261.1016721671alpha-L-arabinofuranosidase [Arabidopsis thaliana]
RefSeqNP_187685.1016721671ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana]
RefSeqNP_197984.2016701667ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana]
RefSeqXP_002523672.104067238674Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3ug5_F7e-1724756068393B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
PDB3ug5_E7e-1724756068393B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
PDB3ug5_D7e-1724756068393B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
PDB3ug5_C7e-1724756068393B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
PDB3ug5_B7e-1724756068393B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
BX84131133413340
HO8526834142476560
HO7807404022756730
HO8072913181544710
BX841311373113471.6
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_009_00046.1Aquca_009_00046.3Aquca_009_00046.2
Arabidopsis lyrata478409489456855811
Arabidopsis thalianaAT3G10740.1AT5G26120.1
Brachypodium distachyonBradi4g43710.1Bradi4g26270.1Bradi4g26270.3Bradi1g57017.1Bradi4g26270.2
Bradi1g17257.1Bradi1g63990.2Bradi1g63990.1
Brassica rapaBra002009Bra027763Bra009423Bra009083Bra001376
Carica papayaevm.model.supercontig_33.202evm.model.supercontig_34.172evm.model.supercontig_34.175
Capsella rubellaCarubv10015768mCarubv10002522m
Citrus clementinaCiclev10011228m
Citrus sinensisorange1.1g026638morange1.1g027057m
Cucumis sativusCucsa.337440.1
Eucalyptus grandisEucgr.A02178.1Eucgr.K01691.1Eucgr.A02178.2
Fragaria vescamrna17951.1-v1.0-hybrid
Glycine maxGlyma03g27460.5Glyma03g27460.4Glyma03g27460.2Glyma19g30450.1Glyma19g30150.1
Glyma03g00626.1Glyma03g00633.1Glyma19g30460.1Glyma03g27490.1Glyma19g30470.2
Glyma19g30145.1Glyma03g27470.1
Gossypium raimondiiGorai.002G225800.2Gorai.002G225800.1Gorai.002G225800.3
Linum usitatissimumLus10038988Lus10027276Lus10031008Lus10035405
Malus domesticaMDP0000055078MDP0000256049
Manihot esculentacassava4.1_003090m
Medicago truncatulaMedtr7g088410.1Medtr7g087890.1Medtr7g088470.1Medtr7g088440.1Medtr7g087960.1
Medtr7g088420.1Medtr7g087880.1
Mimulus guttatusmgv1a002391mmgv1a002448m
Oryza sativaLOC_Os11g03730.3LOC_Os11g03730.2LOC_Os11g03730.1LOC_Os12g03470.4LOC_Os12g03470.3
LOC_Os12g03470.2LOC_Os12g03470.1LOC_Os11g03780.2LOC_Os11g03780.1LOC_Os12g03480.1
LOC_Os12g03470.5LOC_Os03g20420.1LOC_Os07g48750.1LOC_Os03g20420.3LOC_Os03g20420.2
LOC_Os12g03530.1
Panicum virgatumPavirv00016916mPavirv00051129mPavirv00020825mPavirv00020824mPavirv00042420m
Pavirv00018090mPavirv00069322mPavirv00018295mPavirv00042419mPavirv00064991m
Pavirv00005360mPavirv00042421mPavirv00035719mPavirv00056898mPavirv00021975m
Physcomitrella patensPp1s317_21V6.1Pp1s106_48V6.2Pp1s106_48V6.1
Phaseolus vulgarisPhvul.001G115700.1Phvul.005G037800.1Phvul.001G116300.1Phvul.001G116100.1Phvul.001G116200.1
Picea abiesMA_10435925g0010
Populus trichocarpaPotri.006G029900.1Potri.006G027700.1Potri.016G025500.5Potri.016G025500.1Potri.016G025500.2
Potri.006G027700.3Potri.016G025500.4Potri.006G027700.2Potri.016G025500.3Potri.006G027700.4
Prunus persicappa002396mppa002372mppa002767m.226.432ppa002767m.226.432ppa002767m.432.629
ppa002767m.432.629
Ricinus communis30045.m000479
Setaria italicaSi009572mSi026078mSi026077mSi026076mSi026219m
Si009562mSi026072mSi029144mSi034569mSi007159m
Selaginella moellendorffii267967269745
Sorghum bicolorSb05g001900.2Sb05g001900.1Sb08g001540.1Sb05g007100.1Sb02g043530.1
Sb01g036960.1
Thellungiella halophilaThhalv10020221mThhalv10020209mThhalv10015637m
Vitis viniferaGSVIVT01025847001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny  (This image is cropped. Click for full image.)