| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034141 |
| Family | GH51 |
| Protein Properties | Length: 675 Molecular Weight: 74482.9 Isoelectric Point: 5.2278 |
| Chromosome | Chromosome/Scaffold: 01 Start: 27248684 End: 27252293 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 224 | 659 | 0 |
| TTKKGSIWIDQVSAMPVDTYKGHGFRNDLYQMMSDIKPRFIRFPGGCFVEGEWLSNAFRWKETVGPWEERPGHFGDVWKYWTDDGLGHFEFFQLAEDIGA APIWVFNNGISHNDEVETATIMPFVQEALDGIEFARGDANSTWGSVRAAMGREEPFELKYVAIGNEDCGKTYYRGNYIVFYDAIKKAYPDIKIISNCDGS SRPLDHPAEYYDFHIYTSASNLFSMYHQFDRTSRKGPKAFVSEYAVTGKDAGKGSLLAALAEAAFLIGLEKNSDIVEMASYAPLFVNTNDRRWNPDAIVF NSSHLYGTPSYWVQRFFAESSGSTLLTSTLKGNSSSLVASAITWKNNEQDYIRIKAVNFGATSVNMKVLVTGLDPNVMKVSGSKKTVLTSTNVMDENSFT QPEKVAPHESLLEMAEEDLTVILPPHSFSSFDLLKE | |||
| Full Sequence |
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| Protein Sequence Length: 675 Download |
| MDTESWKFLR SVCLLSFLLG SCFVYQSLRV VVAQDEGTEP AVTLQVNASN GAGRLIPETL 60 FGIFFEEINH AGAGGLWAEL VSNRGFEAGG QNTPSNIWPW SIVGDHSSIY VATDRSSCFE 120 RNKIALRMDV LCGNKGCPPG GVGVYNPGYW GMNIEEGKKY KVALYVRSTG DIDMSVSLAS 180 SNGSLTLASE KIIASASDVS KWTKKEVVLE AKGTDHGARL QLTTTKKGSI WIDQVSAMPV 240 DTYKGHGFRN DLYQMMSDIK PRFIRFPGGC FVEGEWLSNA FRWKETVGPW EERPGHFGDV 300 WKYWTDDGLG HFEFFQLAED IGAAPIWVFN NGISHNDEVE TATIMPFVQE ALDGIEFARG 360 DANSTWGSVR AAMGREEPFE LKYVAIGNED CGKTYYRGNY IVFYDAIKKA YPDIKIISNC 420 DGSSRPLDHP AEYYDFHIYT SASNLFSMYH QFDRTSRKGP KAFVSEYAVT GKDAGKGSLL 480 AALAEAAFLI GLEKNSDIVE MASYAPLFVN TNDRRWNPDA IVFNSSHLYG TPSYWVQRFF 540 AESSGSTLLT STLKGNSSSL VASAITWKNN EQDYIRIKAV NFGATSVNMK VLVTGLDPNV 600 MKVSGSKKTV LTSTNVMDEN SFTQPEKVAP HESLLEMAEE DLTVILPPHS FSSFDLLKES 660 AKIRMTVSDS SSTL* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06964 | Alpha-L-AF_C | 6.0e-30 | 493 | 650 | 168 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| COG3534 | AbfA | 3.0e-31 | 247 | 392 | 146 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| smart00813 | Alpha-L-AF_C | 1.0e-37 | 493 | 650 | 166 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK50089.1 | 0 | 1 | 672 | 1 | 671 | AF372949_1 AT3g10740/T7M13_18 [Arabidopsis thaliana] |
| GenBank | AAO92261.1 | 0 | 1 | 672 | 1 | 671 | alpha-L-arabinofuranosidase [Arabidopsis thaliana] |
| RefSeq | NP_187685.1 | 0 | 1 | 672 | 1 | 671 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | NP_197984.2 | 0 | 1 | 670 | 1 | 667 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] |
| RefSeq | XP_002523672.1 | 0 | 40 | 672 | 38 | 674 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 7e-17 | 247 | 560 | 68 | 393 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 3ug5_E | 7e-17 | 247 | 560 | 68 | 393 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 3ug5_D | 7e-17 | 247 | 560 | 68 | 393 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 3ug5_C | 7e-17 | 247 | 560 | 68 | 393 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| PDB | 3ug5_B | 7e-17 | 247 | 560 | 68 | 393 | B Chain B, Reassembly And Co-Crystallization Of A Family 9 Processive Endoglucanase From Separately Expressed Gh9 And Cbm3c Modules |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BX841311 | 334 | 1 | 334 | 0 |
| HO852683 | 414 | 247 | 656 | 0 |
| HO780740 | 402 | 275 | 673 | 0 |
| HO807291 | 318 | 154 | 471 | 0 |
| BX841311 | 37 | 311 | 347 | 1.6 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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