| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034151 |
| Family | GH5 |
| Protein Properties | Length: 416 Molecular Weight: 46214.7 Isoelectric Point: 9.2273 |
| Chromosome | Chromosome/Scaffold: 01 Start: 27202216 End: 27204177 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 42 | 366 | 4.3e-33 |
| NGKPFYANGFNAYWLTYEATDPATRFKITYAFQNATSHGLTVARTWGFRDGGYRALQTAPGRYDELTFQGLDFAIAEAKRLGIKMIITFVNNYSDFGGRK QYVEWAKSQGQVVNSEDDFYTNPLVKQFFKNHVKTMVDRVNTFTKIAYKDEPTIMAWELMNEPQCKADPSGKTLTAWIGEMATYVKSLDSKHLLSTGLEG FYGDSSPQRKASLNPVAANVLGTDFIANHFFDAIDFASIHSYPDLWFPNLNETSRLDFLVKWLEGHMEDAQKILKKPLILGEFGKPSNTPGYTLAQRDAV FNATFDTIYASAKKGGPIAGALFWH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 416 Download |
| MKCFCLVAFL AIVITQSYND LGVEAASGNG FVRRKGVQFI LNGKPFYANG FNAYWLTYEA 60 TDPATRFKIT YAFQNATSHG LTVARTWGFR DGGYRALQTA PGRYDELTFQ GLDFAIAEAK 120 RLGIKMIITF VNNYSDFGGR KQYVEWAKSQ GQVVNSEDDF YTNPLVKQFF KNHVKTMVDR 180 VNTFTKIAYK DEPTIMAWEL MNEPQCKADP SGKTLTAWIG EMATYVKSLD SKHLLSTGLE 240 GFYGDSSPQR KASLNPVAAN VLGTDFIANH FFDAIDFASI HSYPDLWFPN LNETSRLDFL 300 VKWLEGHMED AQKILKKPLI LGEFGKPSNT PGYTLAQRDA VFNATFDTIY ASAKKGGPIA 360 GALFWHLISG GMTNFEDPLS IVLSDNTSSV KIIGHQARKL GLIGGRGKLS HKIKI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12876 | Cellulase-like | 0.007 | 188 | 283 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| pfam00150 | Cellulase | 3.0e-6 | 141 | 344 | 219 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 3.0e-30 | 34 | 367 | 349 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB45852.1 | 0 | 1 | 403 | 1 | 401 | hypothetical protein [Thellungiella halophila] |
| RefSeq | NP_187700.1 | 0 | 1 | 415 | 1 | 414 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | NP_187701.1 | 0 | 1 | 404 | 1 | 403 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | NP_189675.1 | 0 | 1 | 350 | 1 | 333 | (1-4)-beta-mannan endohydrolase family [Arabidopsis thaliana] |
| RefSeq | NP_201447.1 | 0 | 1 | 403 | 1 | 400 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 27 | 400 | 2 | 369 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 40 | 367 | 21 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 40 | 367 | 21 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 40 | 367 | 21 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 40 | 367 | 21 | 342 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
