y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra034553 |
Family | CE8 |
Protein Properties | Length: 505 Molecular Weight: 55933.1 Isoelectric Point: 8.6259 |
Chromosome | Chromosome/Scaffold: 08 Start: 12855000 End: 12862579 |
Description | pectin methylesterase 44 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 192 | 487 | 0 |
VSVALDGTGNFTKIMDAIKAAPEYSSKRFVIYIKKGLYLENVEIKKKKWNLVMLGDGIDVTVISGNRNFVDGWTTFRSATFAVSGKGFLARDITFQNTAG PEKHQAVALRSDSDLSVFYRCAMRGFQDTLYTHTMRQFYRECTITGTVDFIFGDGTVVFQNCHILARRGLPNQKNTITAQGRKDPNQPSGFSIQFSNISA DADLVPYLNTTRTYLGRPWKEYSRTIFMRNNMSNVVRPEGWLEWNADFALSTLFYGEFLNYGPGSGLSSRVKWPGFHVLNNSNQANNFTVTQFIKG |
Full Sequence |
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Protein Sequence Length: 505 Download |
MPYDYLKVPA SEFVSSINTI VEVIRQMSSI LAQFADFSGD RRLQNAVSDC LDLLDVSSDE 60 LSWSASASEN PHGKGNGTGN VRSDTQTWLS AALSNQDTCK EGLDGTSGLV KTLIAGSLDQ 120 LYSMLRELLP LVQADQKPKP ISKPGPIAKG PKAPPGRGLR SNTDHDESPR FPDWLRSKDR 180 KLLETNGVSY DVSVALDGTG NFTKIMDAIK AAPEYSSKRF VIYIKKGLYL ENVEIKKKKW 240 NLVMLGDGID VTVISGNRNF VDGWTTFRSA TFAVSGKGFL ARDITFQNTA GPEKHQAVAL 300 RSDSDLSVFY RCAMRGFQDT LYTHTMRQFY RECTITGTVD FIFGDGTVVF QNCHILARRG 360 LPNQKNTITA QGRKDPNQPS GFSIQFSNIS ADADLVPYLN TTRTYLGRPW KEYSRTIFMR 420 NNMSNVVRPE GWLEWNADFA LSTLFYGEFL NYGPGSGLSS RVKWPGFHVL NNSNQANNFT 480 VTQFIKGDLW LPSTGVTFTA GLDI* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 7.0e-166 | 75 | 504 | 434 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 8.0e-170 | 75 | 502 | 430 | + pectinesterase/pectinesterase inhibitor | ||
PLN02506 | PLN02506 | 8.0e-179 | 86 | 502 | 419 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 0 | 3 | 504 | 502 | + probable pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 191 | 488 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABM06040.1 | 0 | 101 | 504 | 2 | 404 | At4g33220 [Arabidopsis thaliana] |
DDBJ | BAF42041.1 | 0 | 4 | 502 | 35 | 507 | pectin methylesterase 4 [Pyrus communis] |
EMBL | CAB36796.1 | 0 | 34 | 504 | 8 | 477 | pectinesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_567917.4 | 0 | 3 | 504 | 25 | 525 | enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002326321.1 | 0 | 6 | 504 | 37 | 520 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 194 | 502 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 184 | 502 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 8e-24 | 202 | 459 | 18 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 8e-24 | 202 | 459 | 18 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-23 | 202 | 459 | 18 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX042130 | 242 | 178 | 419 | 0 |
EV567954 | 243 | 213 | 455 | 0 |
DY290214 | 368 | 103 | 470 | 0 |
EX025506 | 226 | 280 | 505 | 0 |
DR937739 | 286 | 220 | 505 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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