| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034584 |
| Family | CBM22 |
| Protein Properties | Length: 574 Molecular Weight: 63959.2 Isoelectric Point: 6.9117 |
| Chromosome | Chromosome/Scaffold: 08 Start: 12701019 End: 12704032 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 46 | 161 | 3.8e-23 |
| IIVNPDLQNGSQGWSQMGNTKVDFTEFGGNKFVIARGRNQSYDSVSQKVYLEKGLLYTFSAWLQVSKGNSPVRAVFKKNGKYKHAGSVIAESKCWSMLKG GLTVDESGPADLYFES | |||
| GH10 | 220 | 481 | 0 |
| QNRLGFPFGCSAGSNILGNQAFQDWFTKRFTVTVFENEMKWYSTEVVRGKEDYSTADAMVRLFKQHGIAIRGHHIILDDPKYQPSWVTALNGPDLYNAVK RRVDSVVSRYKGQLASWDVVNENLHFSFFENAMGPKVSYNVFEQAHAVDPTTTMFMNEFNTLEQPGDAVSSPARYLQKLRELQSIRVPGNIPLGIGLESH FFNTPNIPYMRSALDTLGATGLPIWLTEVDVAAPPNVQANYFEQVLREGHAHPKVTGMVTWS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 574 Download |
| MKLLLLLLAF CCLSLSRCEE KNVPYDYSAT IECLGNPNKP QYNGGIIVNP DLQNGSQGWS 60 QMGNTKVDFT EFGGNKFVIA RGRNQSYDSV SQKVYLEKGL LYTFSAWLQV SKGNSPVRAV 120 FKKNGKYKHA GSVIAESKCW SMLKGGLTVD ESGPADLYFE SEDTTAEIWV DSVSWQPFTQ 180 EEWSSHHKQS IDITRKGAVR IRAVNSAGEP VPNATISILQ NRLGFPFGCS AGSNILGNQA 240 FQDWFTKRFT VTVFENEMKW YSTEVVRGKE DYSTADAMVR LFKQHGIAIR GHHIILDDPK 300 YQPSWVTALN GPDLYNAVKR RVDSVVSRYK GQLASWDVVN ENLHFSFFEN AMGPKVSYNV 360 FEQAHAVDPT TTMFMNEFNT LEQPGDAVSS PARYLQKLRE LQSIRVPGNI PLGIGLESHF 420 FNTPNIPYMR SALDTLGATG LPIWLTEVDV AAPPNVQANY FEQVLREGHA HPKVTGMVTW 480 SGYNPRGCFR MCLTDGNFRN LPTGDVVDKL LREWGGLRGK TTGLTDADGY FEASLFHGDY 540 DLSIAHPLTN CTASHSFKLT SDDYHPSPTV VRV* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.0002 | 44 | 164 | 132 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-32 | 247 | 450 | 215 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-52 | 225 | 480 | 278 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-83 | 258 | 507 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA19866.1 | 0 | 26 | 573 | 119 | 669 | putative protein [Arabidopsis thaliana] |
| EMBL | CAA19866.1 | 0 | 398 | 506 | 2 | 109 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_195109.2 | 0 | 9 | 573 | 10 | 576 | catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195110.3 | 0 | 16 | 573 | 16 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_195112.2 | 0 | 17 | 573 | 17 | 576 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-28 | 227 | 507 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 2bnj_A | 2e-23 | 218 | 513 | 9 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1i1x_A | 3e-23 | 218 | 513 | 9 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| PDB | 1i1w_A | 3e-23 | 218 | 513 | 9 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1gor_A | 3e-23 | 218 | 513 | 9 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
