| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034821 |
| Family | GT4 |
| Protein Properties | Length: 809 Molecular Weight: 91831.2 Isoelectric Point: 7.3137 |
| Chromosome | Chromosome/Scaffold: 05 Start: 21565294 End: 21568689 |
| Description | UDP-Glycosyltransferase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT4 | 571 | 672 | 4.2e-21 |
| YFLGKMVWAKGYRELIDLMAKHKSDLGGFNLDVYGNGEDAVEVQRAAQKLDLNLNFLKGRDHADDALHKYKVFINPSISDVLCTATAEALAMGKFVVCAD HP | |||
| Full Sequence |
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| Protein Sequence Length: 809 Download |
| MAKEIQSQSP PSSTANGITF SSSSSSSPSL SMMLSSTNAF SLLSKGWREV RDSADADLQL 60 MRKRANSVKN LASTFDREIE NFLNNSAMSA FPVVSSSPSS AFGNEIGIMK KLEPKISEFR 120 RVYSAPEISR KVMERWGPAK AKLGMDLSAI KKAIVSEMDL DERELEMRRR RDRDRFREFY 180 AEREGEGEGS FGDWKPIRSL KSRFKEFEKR SSLELLIGFK NSELMEKLKA SFQSLYKETD 240 EAKDVPPLDV PELLASLVRQ SEPFLDQIGV RKDLCDRVVE NLYKCKSQHL WRLPSSQASD 300 LVENDNHVDD LDMRIASVLQ STGHHYDGGF WTDFLKPETP ESKRHVAIVT TASLPWMTGT 360 AVNPLFRAAY LAKSAKQSVT LVVPWLCESD QELVYPNNLT FSSPEEQESY IRTWLEERIG 420 FKADFKISFY PGKFSKERRS IFPAGDTSQF IPSKDADIAI LEEPEHLNWY HHGKRWTDKF 480 NHVVGIVHTN YLEYIKREKH GAIQAFFVNH VNNWVTRAYC DKVLRLSGAT QDLPKSVICN 540 VHGVNPKFLM IGEKIAEERS RGEQAFSKGA YFLGKMVWAK GYRELIDLMA KHKSDLGGFN 600 LDVYGNGEDA VEVQRAAQKL DLNLNFLKGR DHADDALHKY KVFINPSISD VLCTATAEAL 660 AMGKFVVCAD HPSNEFFRSF PNCLTYKTSE DFVNKVKEAM SKEPLPLTPE QMYNLSWEAA 720 TQRFMEYSDL DKILNDEDGG KRMRKSRSVP SFNEVIDGGL AFTHYVLTGN DFLRLCSGAT 780 PKTKDYDMQH CKDLKLVPPQ AHKPVYGW* 840 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR00032 | argG | 2.0e-10 | 427 | 736 | 345 | + argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria [Amino acid biosynthesis, Glutamate family]. | ||
| pfam00534 | Glycos_transf_1 | 1.0e-10 | 572 | 706 | 142 | + Glycosyl transferases group 1. Mutations in this domain of human PIGA lead to disease (Paroxysmal Nocturnal haemoglobinuria). Members of this family transfer activated sugars to a variety of substrates, including glycogen, Fructose-6-phosphate and lipopolysaccharides. Members of this family transfer UDP, ADP, GDP or CMP linked sugars. The eukaryotic glycogen synthases may be distant members of this family. | ||
| COG0438 | RfaG | 3.0e-12 | 344 | 727 | 402 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
| PLN02501 | PLN02501 | 0 | 37 | 808 | 787 | + digalactosyldiacylglycerol synthase | ||
| PLN02846 | PLN02846 | 0 | 341 | 799 | 460 | + digalactosyldiacylglycerol synthase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABA55727.1 | 0 | 35 | 808 | 9 | 780 | digalactosyldiacylglycerol synthase 1 [Vigna unguiculata] |
| RefSeq | NP_187773.1 | 0 | 38 | 808 | 32 | 808 | DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); UDP-galactosyltransferase/ galactolipid galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| Swiss-Prot | Q6DW74 | 0 | 35 | 808 | 9 | 786 | DGDG1_LOTJA RecName: Full=Digalactosyldiacylglycerol synthase 1, chloroplastic; Flags: Precursor |
| RefSeq | XP_002323386.1 | 0 | 35 | 808 | 12 | 793 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002533901.1 | 0 | 36 | 808 | 9 | 797 | galactolipid galactosyltransferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2l7c_A | 0.003 | 564 | 582 | 1 | 19 | A Chain A, Biophysical Studies Of Lipid Interacting Regions Of Dgd2 In Arabidopsis Thaliana |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| glycolipid biosynthesis | RXN-1225 | EC-2.4.1.241 | digalactosyldiacylglycerol synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO795393 | 404 | 415 | 809 | 0 |
| GO850017 | 333 | 336 | 668 | 0 |
| GO850146 | 328 | 395 | 722 | 0 |
| GO871962 | 320 | 341 | 660 | 0 |
| GO876235 | 345 | 343 | 685 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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