| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034832 |
| Family | GT41 |
| Protein Properties | Length: 915 Molecular Weight: 101470 Isoelectric Point: 5.9917 |
| Chromosome | Chromosome/Scaffold: 05 Start: 21632100 End: 21636515 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT41 | 358 | 849 | 0 |
| IKPNFAQSLNNLGVVYTVQGKMDAAASMIEKAILANPTYAEAFNNLGVLYRDAGNITAAIDAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLYEAHR DWGWRFTRLHPQYTSWDNLKDPDRPIIIGYISPDFFTHSVSYFIEAPLTHHDYTKYKVVVYSAVVKADAKTFRFRDKVLKQVGVWKDIYGIDEKKIASMV REDKIDILVELTGHTANNKLGTMACRPAPLQVTWIGYPNTTGLPTVDYRITDSLADPPDTKQKQVEELVRLPECFLCYTPSPEAGPVCPTPALSNGFVTF GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSIRQRFLTTLEQLGLESKRVDLLPLILFNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGSVHAHNVGVSLLSKVGLGHLVAKDEDEYVQLSVDLASDVTALSKLRMSLRDLMAGSPVCNGPSFAVALESAYRNMWRKYCKGEV | |||
| Full Sequence |
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| Protein Sequence Length: 915 Download |
| MVGIEDNTER ERSPAVENGF ANGSRSSPTT EVLSPTPKAT QGNNDTLSYA NILRARNKFT 60 DALALYETIL EKDCKNVEAH IGKGICLQTQ NKGNLAFDCF SEAIRLDPGN ACALTHCGIL 120 HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK 180 IDPRYAPAYY NLGVVYSEMM QYDSALGCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI 240 TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVSQG VAYYKKALYY NWHYADAMYN 300 LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP 360 NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF NNLGVLYRDA GNITAAIDAY 420 EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLYEAHRDWG WRFTRLHPQY TSWDNLKDPD 480 RPIIIGYISP DFFTHSVSYF IEAPLTHHDY TKYKVVVYSA VVKADAKTFR FRDKVLKQVG 540 VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPLQVT WIGYPNTTGL 600 PTVDYRITDS LADPPDTKQK QVEELVRLPE CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF 660 NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ RFLTTLEQLG LESKRVDLLP 720 LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLSKV 780 GLGHLVAKDE DEYVQLSVDL ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VALESAYRNM 840 WRKYCKGEVP SLRRMEMLQR EVQEDPSISK ELGSSRLNVT GEATPSLKAN GSAPVPSSLP 900 TQSSQLSKRM DSTS* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 6.0e-19 | 50 | 425 | 407 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 2.0e-19 | 33 | 451 | 454 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 9.0e-25 | 47 | 429 | 418 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 7.0e-88 | 312 | 844 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAX46402.1 | 0 | 10 | 904 | 12 | 910 | putative SPINDLY protein [Rosa luciae] |
| RefSeq | NP_187761.1 | 0 | 1 | 914 | 1 | 914 | SPY (SPINDLY); protein N-acetylglucosaminyltransferase/ protein binding / transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002281883.1 | 0 | 10 | 904 | 12 | 907 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002323412.1 | 0 | 10 | 900 | 12 | 908 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 10 | 905 | 12 | 912 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4gz6_D | 3e-36 | 261 | 633 | 9 | 386 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 4gz6_D | 4e-23 | 655 | 850 | 524 | 715 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 4gz6_D | 1e-17 | 108 | 264 | 6 | 155 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 4gz6_D | 0.000000000000008 | 155 | 302 | 12 | 152 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 4gz6_D | 0.00000002 | 37 | 193 | 2 | 152 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 425 | 822 | 0 |
| GT041789 | 337 | 340 | 676 | 0 |
| GT041789 | 109 | 167 | 273 | 0.0000000000001 |
| GT041789 | 125 | 231 | 353 | 0.00001 |
| GT041789 | 61 | 642 | 702 | 0.59 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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