| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034943 |
| Family | AA1 |
| Protein Properties | Length: 543 Molecular Weight: 60387.4 Isoelectric Point: 9.8612 |
| Chromosome | Chromosome/Scaffold: 08 Start: 5010751 End: 5017817 |
| Description | SKU5-similar 6 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 47 | 497 | 0 |
| QQGILINGQFPGPDIHSVTNDNLIINVHNSLDEPFLISWNGVQNRRNSYVDGMYGTTCPIPPRTNYTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL SRPGIPVPFADPAGDYTVLIGDWYKSNHTDLKARLDRGRKLPSPDGILINGRSNGATLNVEQGKTYRLRISNVGLQNSLNFRIQNHRMKLVEVEGTHTMQ TMFSSLDVHVGQSYSVLITADQSPRDYYVVASSRFTGKIITTTGILRYSGSSTSASGPIPGGPTIQIDWSLNQARAIRTNLTASGPRPNPQGSYHYGLIP LIRTIVFGSSAGQINGKQRYGINSVSFVPADTPLKLADFFKISGVYKINSISDKPTGGGLYLDTSVLQVDYRTFIEIVFENKENIVQSYHLNGYSFWVVG MDGGQWNTGSRNGYNLRDAVSRSTVQVYPKSWTAIYIALDNVGMWNLRSEF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 543 Download |
| MMAVGRSGGT VLLLCYSFFA LVTAESPYRF FDWNVTYGDI YPLGVRQQGI LINGQFPGPD 60 IHSVTNDNLI INVHNSLDEP FLISWNGVQN RRNSYVDGMY GTTCPIPPRT NYTYILQVKD 120 QIGSFYYFPS LAFHKAAGGF GGIRILSRPG IPVPFADPAG DYTVLIGDWY KSNHTDLKAR 180 LDRGRKLPSP DGILINGRSN GATLNVEQGK TYRLRISNVG LQNSLNFRIQ NHRMKLVEVE 240 GTHTMQTMFS SLDVHVGQSY SVLITADQSP RDYYVVASSR FTGKIITTTG ILRYSGSSTS 300 ASGPIPGGPT IQIDWSLNQA RAIRTNLTAS GPRPNPQGSY HYGLIPLIRT IVFGSSAGQI 360 NGKQRYGINS VSFVPADTPL KLADFFKISG VYKINSISDK PTGGGLYLDT SVLQVDYRTF 420 IEIVFENKEN IVQSYHLNGY SFWVVGMDGG QWNTGSRNGY NLRDAVSRST VQVYPKSWTA 480 IYIALDNVGM WNLRSEFWAR QYLGQQLYLR VFTTSTSLRD EYPIPKNSRL CGRAKGRHTR 540 PL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02991 | PLN02991 | 0 | 2 | 539 | 539 | + oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 12 | 539 | 532 | + oxidoreductase | ||
| PLN02354 | PLN02354 | 0 | 1 | 536 | 545 | + copper ion binding / oxidoreductase | ||
| PLN02835 | PLN02835 | 0 | 12 | 539 | 528 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 11 | 533 | 535 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF99833.1 | 0 | 2 | 542 | 1 | 541 | AC008046_5 Putative pectinesterase [Arabidopsis thaliana] |
| GenBank | AAL09733.1 | 0 | 2 | 542 | 1 | 541 | At1g76160/T23E18_10 [Arabidopsis thaliana] |
| GenBank | AAL24296.1 | 0 | 1 | 542 | 1 | 542 | Unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_177743.1 | 0 | 2 | 542 | 1 | 541 | sks5 (SKU5 Similar 5); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | NP_564479.1 | 0 | 1 | 542 | 1 | 542 | SKS6 (SKU5-SIMILAR 6); pectinesterase [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 29 | 532 | 4 | 539 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1asq_A | 0 | 29 | 532 | 4 | 539 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1asp_B | 0 | 29 | 532 | 4 | 539 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1asp_A | 0 | 29 | 532 | 4 | 539 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1aso_B | 0 | 29 | 532 | 4 | 539 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
