| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra034960 |
| Family | CE8 |
| Protein Properties | Length: 527 Molecular Weight: 57549.6 Isoelectric Point: 8.5181 |
| Chromosome | Chromosome/Scaffold: 000100 Start: 200161 End: 203990 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 214 | 509 | 0 |
| AVVAADGTGNFTTISEAVLAAPDYSTKRYVIHVKRGIYVENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAVSGRGFLARDITFQNTAG PEKHQAVAIRSDSDLGVFYRCAMRGYQDTLYAHTMRQFFRECIITGTVDFIFGDATAVFQDCQIKAKQGLPNQKNSITAQGRKDPNQPTGFMIQFCNITA DTDLLPNLNTTATYLGRPWKLYSRTVFMQNYMSDVLKPEGWLEWNGNFALDTLYYAEYMNNGPGASIDLRVKWPGYHLLNTSADAINFTVAQFIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 527 Download |
| MIKLGGLVSS TFFLLLTLSL CSAQNDVFSS TGYVQIECLR VPPLEFAGAA KTAVDLVRKA 60 GALVSKFDKK FGNSRMGHAI LDCLDLLDSA SEELSWIISA SQNPNGKDNS TGDVASDLRT 120 WISAALSNQD TCLDGFEGTN GIVKKVVAGG LSQVGKTIQN LLTMVHFSSK PKSMTNIAHK 180 TTTAHSGFSK FPTWVRPGDR KLLQIDGLST AADAVVAADG TGNFTTISEA VLAAPDYSTK 240 RYVIHVKRGI YVENVEIKKK KWNIMMVGDG IDATVITGNR SFIDGWTTFR SATFAVSGRG 300 FLARDITFQN TAGPEKHQAV AIRSDSDLGV FYRCAMRGYQ DTLYAHTMRQ FFRECIITGT 360 VDFIFGDATA VFQDCQIKAK QGLPNQKNSI TAQGRKDPNQ PTGFMIQFCN ITADTDLLPN 420 LNTTATYLGR PWKLYSRTVF MQNYMSDVLK PEGWLEWNGN FALDTLYYAE YMNNGPGASI 480 DLRVKWPGYH LLNTSADAIN FTVAQFIQGN LWLPATGIKY TAGLAS* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02301 | PLN02301 | 1.0e-162 | 108 | 524 | 418 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 1.0e-164 | 58 | 526 | 495 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 0 | 21 | 526 | 507 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 223 | 510 | 288 | + Pectinesterase. | ||
| PLN02506 | PLN02506 | 0 | 49 | 526 | 478 | + putative pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF42041.1 | 0 | 21 | 526 | 26 | 509 | pectin methylesterase 4 [Pyrus communis] |
| EMBL | CBI29628.1 | 0 | 34 | 525 | 39 | 526 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189913.3 | 0 | 1 | 526 | 1 | 527 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567917.4 | 0 | 12 | 524 | 7 | 523 | enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| Swiss-Prot | Q43062 | 0 | 29 | 522 | 39 | 518 | PME_PRUPE RecName: Full=Pectinesterase/pectinesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase inhibitor PPE8B; AltName: Full=Pectin methylesterase inhibitor PPE8B; Includes: RecName: Full=Pectinesterase PPE8B; Short=PE PPE8B; AltName: Full=Pectin methylesterase PPE8B; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 212 | 524 | 3 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 213 | 524 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1qjv_B | 1e-21 | 209 | 480 | 1 | 313 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 1e-21 | 209 | 480 | 1 | 313 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-21 | 209 | 480 | 1 | 313 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
