| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035043 |
| Family | CBM43 |
| Protein Properties | Length: 124 Molecular Weight: 13839 Isoelectric Point: 7.9768 |
| Chromosome | Chromosome/Scaffold: 07 Start: 21932454 End: 21932995 |
| Description | Carbohydrate-binding X8 domain superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 32 | 109 | 1.2e-27 |
| WCVAKPSSDQAALLDNINYACSHVDCRVLSSGCPCYSPGNLINHASVAMNLYYQANGRNYWNCNFKNSGLIVITNPSE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 124 Download |
| MAKAWMCLCF LIFFYLSSER NFIKVNAETK TWCVAKPSSD QAALLDNINY ACSHVDCRVL 60 SSGCPCYSPG NLINHASVAM NLYYQANGRN YWNCNFKNSG LIVITNPSEH YLPLLLLSTT 120 III* 180 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 4.0e-17 | 31 | 100 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-30 | 31 | 108 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAB64039.1 | 2.99878e-43 | 1 | 117 | 1 | 120 | putative beta-1,3-glucanase, C terminal fragment [Arabidopsis thaliana] |
| RefSeq | NP_177973.4 | 0 | 1 | 108 | 1 | 108 | unknown protein [Arabidopsis thaliana] |
| RefSeq | NP_181895.2 | 9.00054e-42 | 1 | 108 | 1 | 111 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
| RefSeq | XP_002300444.1 | 9.99967e-42 | 28 | 108 | 28 | 108 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528491.1 | 1.96182e-44 | 1 | 108 | 1 | 110 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 1e-18 | 31 | 108 | 12 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
