| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035561 |
| Family | CBM43 |
| Protein Properties | Length: 461 Molecular Weight: 49207.5 Isoelectric Point: 5.1498 |
| Chromosome | Chromosome/Scaffold: 02 Start: 7529276 End: 7531162 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 372 | 455 | 2.1e-33 |
| WCVANGKTSKEKLQEGLDYACGEGGADCRPIQKGATCYDPESLEAHASYAFNSYYQKNARGVGTCDFGGAAYVVSQPPKYGKCE | |||
| GH17 | 27 | 346 | 0 |
| IGVNYGRIANNLPAPEKVVELLKSQGINRVKLYDTDSSVLTALANSGIKVVVSLPNENLSAAAADQSYTDAWVQDNVKKYTPATDIEAIAVGNEVFVDPR NTTAYLVPAMKNVQSSLAKFSLDGAIKISSPLALSALANSYPPSAGSFKPDLIEPVIKPMLDFLRKTSSHLMVNAYPFFAYAANADKISLEYALFKENAG NVDSGNGLKYENLLDAQIDAVFAAMSAVGFNDVKVVVTETGWPSAGDENEIGAGSANAAAYNGGLVKRVLTGNGTPLKPEEPLNVYLFALFNENQKTGPT SERNYGLFYPNENKVYDVPF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| MSLFVLSLLM LSSFSVIPFT HADSGMIGVN YGRIANNLPA PEKVVELLKS QGINRVKLYD 60 TDSSVLTALA NSGIKVVVSL PNENLSAAAA DQSYTDAWVQ DNVKKYTPAT DIEAIAVGNE 120 VFVDPRNTTA YLVPAMKNVQ SSLAKFSLDG AIKISSPLAL SALANSYPPS AGSFKPDLIE 180 PVIKPMLDFL RKTSSHLMVN AYPFFAYAAN ADKISLEYAL FKENAGNVDS GNGLKYENLL 240 DAQIDAVFAA MSAVGFNDVK VVVTETGWPS AGDENEIGAG SANAAAYNGG LVKRVLTGNG 300 TPLKPEEPLN VYLFALFNEN QKTGPTSERN YGLFYPNENK VYDVPFSAKS APVNDSKEKV 360 PVKSPSHVGQ TWCVANGKTS KEKLQEGLDY ACGEGGADCR PIQKGATCYD PESLEAHASY 420 AFNSYYQKNA RGVGTCDFGG AAYVVSQPPK YGKCEFPTGH * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03198 | Glyco_hydro_72 | 0.002 | 45 | 130 | 97 | + Glucanosyltransferase. This is a family of glycosylphosphatidylinositol-anchored beta(1-3)glucanosyltransferases. The active site residues in the Aspergillus fumigatus example are the two glutamate residues at 160 and 261. | ||
| pfam07983 | X8 | 9.0e-25 | 371 | 443 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-38 | 371 | 456 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-86 | 27 | 346 | 320 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL77689.1 | 0 | 1 | 460 | 1 | 460 | AT5g55180/MCO15_13 [Arabidopsis thaliana] |
| GenBank | AAM66024.1 | 0 | 1 | 460 | 1 | 460 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB08587.1 | 0 | 1 | 449 | 1 | 449 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001154780.1 | 0 | 1 | 449 | 1 | 449 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_568822.1 | 0 | 1 | 460 | 1 | 460 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghs_B | 0 | 27 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 27 | 346 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 2cyg_A | 0 | 27 | 346 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_D | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 3f55_C | 0 | 27 | 347 | 2 | 316 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
