| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035579 |
| Family | CE8 |
| Protein Properties | Length: 379 Molecular Weight: 41728.7 Isoelectric Point: 5.5103 |
| Chromosome | Chromosome/Scaffold: 02 Start: 7431663 End: 7436007 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 80 | 371 | 0 |
| IVVEKNGRGDSVTVQGAVDMVPDSNSERVKIYILPGIYREKVNVPITKPYISFIGSQKYVGKTVISWSDKASDRYSNGSEIGTYRTATVTVDSDFFCATA ITIQNTVVAVPGDQGNQAAALRIKGDKAMLYSVRILGSQDTLDDESGSHYFLKCYIEGNVDFIFGNAKSLYRDCYIRSNAKRFGSIAAHHRDRENEDTGF SFVNCTISGTGNVTLGRAWGNYARIIYSNCYIADVITPAGWDDWSDPARDSEVLFGEYNCTGKGADRTGRVPWSKSLTQDEAKPFLGMEFIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 379 Download |
| MKAKAFIPSV SFLCFWVLLG LGTSGLLQND DIGIESGRYI SWEDLSVAED VRRERSLKHG 60 NGVSREYLAP SSAEDGSRVI VVEKNGRGDS VTVQGAVDMV PDSNSERVKI YILPGIYREK 120 VNVPITKPYI SFIGSQKYVG KTVISWSDKA SDRYSNGSEI GTYRTATVTV DSDFFCATAI 180 TIQNTVVAVP GDQGNQAAAL RIKGDKAMLY SVRILGSQDT LDDESGSHYF LKCYIEGNVD 240 FIFGNAKSLY RDCYIRSNAK RFGSIAAHHR DRENEDTGFS FVNCTISGTG NVTLGRAWGN 300 YARIIYSNCY IADVITPAGW DDWSDPARDS EVLFGEYNCT GKGADRTGRV PWSKSLTQDE 360 AKPFLGMEFI SGDQWLRL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 1.0e-101 | 79 | 377 | 299 | + putative pectinesterase | ||
| PLN02665 | PLN02665 | 4.0e-102 | 72 | 376 | 308 | + pectinesterase family protein | ||
| PLN02634 | PLN02634 | 1.0e-112 | 65 | 376 | 314 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 4.0e-124 | 77 | 378 | 304 | + pectinesterase family protein | ||
| PLN02671 | PLN02671 | 0 | 1 | 378 | 378 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE67559.1 | 0 | 37 | 378 | 31 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_200370.1 | 0 | 1 | 378 | 1 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002264297.1 | 0 | 17 | 378 | 18 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298857.1 | 0 | 75 | 378 | 15 | 318 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522727.1 | 0 | 7 | 378 | 31 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 80 | 377 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 5e-38 | 81 | 377 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.0000000000002 | 81 | 369 | 34 | 358 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 1qjv_B | 0.00000000004 | 92 | 253 | 20 | 188 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 0.00000000004 | 92 | 253 | 20 | 188 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
