| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035586 |
| Family | GH14 |
| Protein Properties | Length: 529 Molecular Weight: 59797.3 Isoelectric Point: 8.458 |
| Chromosome | Chromosome/Scaffold: 02 Start: 7408656 End: 7411157 |
| Description | beta-amylase 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 92 | 517 | 0 |
| YVMMPIDTFGIDASGCPIIKRLKALTVSLKALKLAGVHGVAVEVWWGIVERFCPLEFKWSLYEELFRLISEAGLKLHVSLCFHSNMHLFGGKGGISLPLW IREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYFGNVIEEIGVGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHD KYMMEDLMTVASQEGKPQWGSRDPPSAGCYNSFPSGVPFFEEGHDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLTRRQEEEKSSVMLVAKIGGIYW WYKTSSHPAELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLLRQIHDVSKKRTIQVTGRNTSERFDQMGLRQIRENCVQP NGETVRSFTFFRLNEKIFRVENWNNF | |||
| Full Sequence |
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| Protein Sequence Length: 529 Download |
| MAETGGIRCG CREVSGGTFF HPGGFPCFLE QRTRRNRNFF RNVSYVPSFK RGRLITKRSS 60 VAGNSRIFSM DAREKSRSFV LVSSRHKKVP VYVMMPIDTF GIDASGCPII KRLKALTVSL 120 KALKLAGVHG VAVEVWWGIV ERFCPLEFKW SLYEELFRLI SEAGLKLHVS LCFHSNMHLF 180 GGKGGISLPL WIREIGDVNK DIYYRDKNGF SNNDYLTLGV DQLPLFGGRT AVQCYEDFML 240 SFSTKFEPYF GNVIEEIGVG LGPSGELRYP AHPSGDGRWK FPGIGEFQCH DKYMMEDLMT 300 VASQEGKPQW GSRDPPSAGC YNSFPSGVPF FEEGHDSFLS DYGRFFLEWY SGKLICHADA 360 ILAKAADVLT RRQEEEKSSV MLVAKIGGIY WWYKTSSHPA ELTAGYYNTA LRDGYDPVAS 420 VLSRHGAALH IPCLDMADSE TPEKYLCSPE GLLRQIHDVS KKRTIQVTGR NTSERFDQMG 480 LRQIRENCVQ PNGETVRSFT FFRLNEKIFR VENWNNFVPF IRQMSADV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 2.0e-105 | 89 | 527 | 446 | + beta-amylase | ||
| PLN00197 | PLN00197 | 2.0e-135 | 87 | 524 | 443 | + beta-amylase; Provisional | ||
| PLN02801 | PLN02801 | 1.0e-139 | 89 | 527 | 451 | + beta-amylase | ||
| PLN02803 | PLN02803 | 2.0e-150 | 52 | 525 | 483 | + beta-amylase | ||
| PLN02161 | PLN02161 | 0 | 1 | 528 | 531 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK76508.1 | 0 | 46 | 528 | 2 | 484 | putative beta-amylase [Arabidopsis thaliana] |
| GenBank | AAK84008.1 | 0 | 39 | 525 | 26 | 508 | AF393847_1 beta-amylase PCT-BMYI [Solanum tuberosum] |
| DDBJ | BAH20280.1 | 0 | 31 | 528 | 1 | 498 | AT5G55700 [Arabidopsis thaliana] |
| RefSeq | NP_568829.2 | 0 | 1 | 528 | 1 | 531 | BAM4 (BETA-AMYLASE 4); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002265698.1 | 0 | 1 | 528 | 1 | 522 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v3i_A | 0 | 89 | 527 | 12 | 444 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6d_A | 0 | 89 | 527 | 12 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
| PDB | 1wds_A | 0 | 89 | 527 | 12 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| PDB | 1wdp_A | 0 | 89 | 527 | 12 | 444 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| PDB | 1q6c_A | 0 | 89 | 527 | 12 | 444 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE465458 | 241 | 241 | 481 | 0 |
| EV096717 | 235 | 112 | 346 | 0 |
| EV107336 | 225 | 305 | 529 | 0 |
| ES906343 | 258 | 1 | 254 | 0 |
| DR365735 | 223 | 84 | 306 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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