| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035588 |
| Family | PL1 |
| Protein Properties | Length: 389 Molecular Weight: 42978.1 Isoelectric Point: 4.8969 |
| Chromosome | Chromosome/Scaffold: 02 Start: 7405496 End: 7406935 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 118 | 307 | 0 |
| IIFDRDMVITLKEDIQVTSYKTIDGRGNNVQIAYGPCLALYQVSNVIIHNIYIHHCVPAKRSLGGYSDGDGISIFESRDVWIDHCTLEKCHDGLIDAVGG STDITISNNYMLNHNEVMLLGHSDEFVGDRDMRVSIAFNYFGEGLVQRMPRCRHGFFHIVNNIYREWEMYAIGGSANPTIFSQGNVFIAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MSIVCTIFLF LLTASTAFAS AFPKPAPVTH WSTSETSNAT TASCSATGNP IDDCWRCDKK 60 WKSNRKSLAD CAVGFGRDSV GGRAGEFYTV TDSGDEDPLN PSPGTLRYAA TQDQPLWIIF 120 DRDMVITLKE DIQVTSYKTI DGRGNNVQIA YGPCLALYQV SNVIIHNIYI HHCVPAKRSL 180 GGYSDGDGIS IFESRDVWID HCTLEKCHDG LIDAVGGSTD ITISNNYMLN HNEVMLLGHS 240 DEFVGDRDMR VSIAFNYFGE GLVQRMPRCR HGFFHIVNNI YREWEMYAIG GSANPTIFSQ 300 GNVFIASDNQ FTKEVTKRES VDGDDEWKEW NWKSEGDEML NGAFFTPSGN EDSPSYTKMS 360 SMVARPASLL KTTHPSVGVL SCQIDQPC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-29 | 129 | 304 | 188 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-64 | 136 | 304 | 180 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-77 | 123 | 308 | 197 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI39737.1 | 0 | 68 | 388 | 2 | 332 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_200383.1 | 0 | 1 | 388 | 1 | 392 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265729.1 | 0 | 1 | 388 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317359.1 | 0 | 47 | 388 | 16 | 368 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522747.1 | 0 | 6 | 388 | 3 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 49 | 349 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 49 | 349 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 8e-21 | 67 | 306 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 9e-17 | 132 | 304 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000000001 | 129 | 346 | 73 | 315 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
