| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035852 |
| Family | PL1 |
| Protein Properties | Length: 411 Molecular Weight: 45359.9 Isoelectric Point: 6.5005 |
| Chromosome | Chromosome/Scaffold: 09 Start: 3299794 End: 3301994 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 129 | 327 | 0 |
| IIFIRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGWRTISDGDGVSIFGGSHVWVDHCSLSNC NDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYVQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 411 Download |
| MLVSSHASFT LVFLYCIFFS AVALSLPVSD PELVVEEVHR QINESISRRN LGYFSCETGN 60 PIDDCWRCDK DWEKNRKQLA DCGIGFGKNA IGGRDGEFYV VTDPGNDDPV NPKPGTLRYA 120 VIQDQPLWII FIRDMTIQLK EELIMNSFKT LDGRGASVHI SGGPCITIQY VTNIIIHGLH 180 IHDCKQGGNT YVRDSPEHYG WRTISDGDGV SIFGGSHVWV DHCSLSNCND GLIDAIRGST 240 AITISNNYLT HHNKVMLLGH SDTYVQDKNM QVTIAFNHFG EGLVQRMPRC RHGYFHVVNN 300 DYTHWEMYAI GGSANPTINS QGNRFLAPNG PFDKEVTKHE DAPESEWSHW NWRSEGDLML 360 NGAFFTLSGA GPGKSSSYSK ASSLAARPSS HVGEITIASG ALSCKKGSHC * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 6.0e-28 | 147 | 325 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 6.0e-72 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-80 | 134 | 329 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32549.1 | 0 | 30 | 410 | 35 | 413 | pectase lyase [Prunus persica] |
| DDBJ | BAB10560.1 | 0 | 1 | 410 | 1 | 410 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAE48664.1 | 0 | 30 | 410 | 35 | 413 | Pectate lyase [Prunus mume] |
| RefSeq | NP_568967.1 | 0 | 1 | 410 | 23 | 432 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002322215.1 | 0 | 21 | 410 | 18 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 60 | 369 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 60 | 369 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-18 | 130 | 326 | 49 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.000000000000004 | 189 | 371 | 120 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.000000000000004 | 189 | 371 | 120 | 327 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
