| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra035984 |
| Family | GH47 |
| Protein Properties | Length: 585 Molecular Weight: 65331.7 Isoelectric Point: 5.0219 |
| Chromosome | Chromosome/Scaffold: 000111 Start: 251813 End: 255261 |
| Description | Glycosyl hydrolase family 47 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH47 | 52 | 407 | 0 |
| MFYHAFDGYMNNAFPLDELRPLSCQGEDTLGGYALTLIDSLDTLALLGDRERFTSSVQWIGKSLQFNINKTVSVFETTIRVLGGLLSAHLIASDYATGMR IPSYDNELLVLAEDLARRMLPAFDTPTGIPYGSITSTAGGGTLTLEFGVLSRLTNDPVFEQVAKNAVRGLWARRSTLDLVGAHINVFTGEWTQKDAGIGT SIDSFYEYLLKAYILFGDEEYLYIFQEAYGSAMHHLHKDPWYVEVNMDSGAIVWPVFNSLQAFWPGLQVLAGDVDPAIRTHTAFFSVWKRYGFTPEGFNL ATLSVQYGQKSYPLRPELIESTYWLYKATRDPRYLDAGRDFVASLQYGAKCPCAVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 585 Download |
| MILMESNKLR WGLCYAIFIS LTLSSLVRDL GVSAEGVNPH EAKQLRDEVR EMFYHAFDGY 60 MNNAFPLDEL RPLSCQGEDT LGGYALTLID SLDTLALLGD RERFTSSVQW IGKSLQFNIN 120 KTVSVFETTI RVLGGLLSAH LIASDYATGM RIPSYDNELL VLAEDLARRM LPAFDTPTGI 180 PYGSITSTAG GGTLTLEFGV LSRLTNDPVF EQVAKNAVRG LWARRSTLDL VGAHINVFTG 240 EWTQKDAGIG TSIDSFYEYL LKAYILFGDE EYLYIFQEAY GSAMHHLHKD PWYVEVNMDS 300 GAIVWPVFNS LQAFWPGLQV LAGDVDPAIR THTAFFSVWK RYGFTPEGFN LATLSVQYGQ 360 KSYPLRPELI ESTYWLYKAT RDPRYLDAGR DFVASLQYGA KCPCAVDSDN LVDNGPYKYI 420 FSTEGHLLPL TPQISLAREH CSYFGGYCPR NATKFEQSND DHQVPEIELG HHSNIYPYHE 480 SFPVTGLIKG LCPRLSHAQK YGLSYVLPEK TEREDVKRPK PVITSRSIVL VSDQSVEKRP 540 QEEGFTSESE PIMSISGGGS SSDQTGQKLT LLESETDDKR VYSS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PTZ00470 | PTZ00470 | 5.0e-57 | 46 | 433 | 467 | + glycoside hydrolase family 47 protein; Provisional | ||
| pfam01532 | Glyco_hydro_47 | 6.0e-143 | 52 | 430 | 458 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26354.1 | 0 | 35 | 506 | 28 | 590 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_199184.1 | 0 | 4 | 584 | 1 | 624 | glycoside hydrolase family 47 protein [Arabidopsis thaliana] |
| RefSeq | XP_002280131.1 | 0 | 35 | 556 | 28 | 611 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311656.1 | 0 | 34 | 537 | 1 | 565 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517026.1 | 0 | 34 | 542 | 29 | 598 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4ayr_A | 0 | 34 | 385 | 2 | 359 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 4ayq_A | 0 | 34 | 385 | 2 | 359 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 4ayp_A | 0 | 34 | 385 | 2 | 359 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 4ayo_A | 0 | 34 | 385 | 2 | 359 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| PDB | 1nxc_A | 4.00001e-41 | 32 | 397 | 5 | 401 | A Chain A, Structure Of Mouse Golgi Alpha-1,2-Mannosidase Ia Reveals The Molecular Basis For Substrate Specificity Among Class I Enzymes (Family 47 Glycosidases) |
