CAZyme Information

Basic Information
SpeciesBrassica rapa
Cazyme IDBra036036
FamilyGH43
Protein PropertiesLength: 464 Molecular Weight: 52681 Isoelectric Point: 7.2934
ChromosomeChromosome/Scaffold: 09 Start: 24847640 End: 24849282
Descriptionglycosyl hydrolase family protein 43
View CDS
External Links
NCBI Taxonomy
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH431553793.5e-32
  SKSYYWYGEYKDGPTYLSYKNGPARVDIIGVGCYSSQDLWTWKNEGVVLAAEETDETHDLHKSNVLERPKVIYNSETGKYVMWMHIDDANYTKASVGVAI
  SDTPTGPFDYLYSKSPHGFDSRDMTIFKDDDNVAYLIYSSEDNSVLHIGPLTEDYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNEALA
  HAAESIMGPWETLGNPCVGGNKVFR
Full Sequence
Protein Sequence     Length: 464     Download
MAKSKHNKKP ALLRCSPFSL VSTLAGCVFM IHLIMLYSRN YSVDLEVSSR LLTHHPIVRE    60
LERVEEENIH MPPPRKRSAR AIKRKPKRPT TLVEEFLDEN SQIRHLFFPD IKTAFGPTKD    120
GNDTLHNFFP GKIWLDTEGN PIQAHGGGIL YDERSKSYYW YGEYKDGPTY LSYKNGPARV    180
DIIGVGCYSS QDLWTWKNEG VVLAAEETDE THDLHKSNVL ERPKVIYNSE TGKYVMWMHI    240
DDANYTKASV GVAISDTPTG PFDYLYSKSP HGFDSRDMTI FKDDDNVAYL IYSSEDNSVL    300
HIGPLTEDYL DVKPVMKRIM VGQHREAPAI FKHQNTYYMI TSGCTGWAPN EALAHAAESI    360
MGPWETLGNP CVGGNKVFRL TTFFSQSTYV IPLPGVPGAF IFMADRWNPA DLRDSRYLWL    420
PLIVGGPADR PLEFTFGFPM WSRVSVYWHR QWRLPLGGGK NIA* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd08999GH43_ABN_24.0e-17165370225+
cd08990GH43_AXH_like7.0e-20187365193+
cd09004GH43_bXyl9.0e-21186369196+
cd08978GH_F2.0e-52158422276+
cd08985GH43_61.0e-131142422282+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
EMBLCBI33680.105445725429unnamed protein product [Vitis vinifera]
RefSeqNP_190557.1014633466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_201555.205545565466glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqNP_975008.105545570471glycosyl hydrolase family protein 43 [Arabidopsis thaliana]
RefSeqXP_002525277.101445751494beta-glucanase, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3vt2_F013142245328A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger
PDB3vt2_E013142245328A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger
PDB3vt2_D013142245328A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger
PDB3vt2_C013142245328A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger
PDB3vt2_B013142245328A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger
Transmembrane Domains
StartEnd
1234
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
GO8561533311274570
GO3743623381234550
EY7037302951394330
GO8017532961624570
GT7395993001284270
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_060_00007.3Aquca_060_00007.1Aquca_060_00007.2
Arabidopsis lyrata906305332819
Arabidopsis thalianaAT5G67540.2AT5G67540.1AT3G49880.1
Brachypodium distachyonBradi2g50980.2Bradi1g71160.1Bradi2g50980.1
Brassica rapaBra024441Bra029980
Capsella rubellaCarubv10027885mCarubv10019437m
Citrus clementinaCiclev10025553mCiclev10025552mCiclev10025561m
Citrus sinensisorange1.1g011114morange1.1g012300morange1.1g012453m
Cucumis sativusCucsa.366970.1Cucsa.366990.1
Eucalyptus grandisEucgr.I00703.2Eucgr.I00703.1Eucgr.H02307.1
Fragaria vescamrna05759.1-v1.0-hybrid
Glycine maxGlyma05g22470.3Glyma17g17390.3Glyma17g17390.2Glyma17g17390.1Glyma05g22470.6
Glyma05g22470.5Glyma05g22470.4Glyma05g22470.2Glyma01g40190.1Glyma11g05100.1
Gossypium raimondiiGorai.011G214500.1Gorai.008G083400.1Gorai.003G030500.1Gorai.003G030500.2
Linum usitatissimumLus10011543Lus10019280
Malus domesticaMDP0000248963MDP0000503275MDP0000406084
Manihot esculentacassava4.1_032973mcassava4.1_007150mcassava4.1_007066m
Medicago truncatulaMedtr5g015460.1Medtr4g097110.1
Mimulus guttatusmgv1a018781mmgv1a005746m
Oryza sativaLOC_Os12g21789.1LOC_Os12g21789.2LOC_Os01g65720.1
Panicum virgatumPavirv00010178mPavirv00067870mPavirv00058950mPavirv00044467m
Physcomitrella patensPp1s410_9V6.1Pp1s16_243V6.1
Phaseolus vulgarisPhvul.003G234900.1Phvul.002G010600.1
Picea abiesMA_181765g0010
Populus trichocarpaPotri.005G148800.1Potri.005G148800.2
Prunus persicappa005306m
Ricinus communis48021.m00001434138.m00001529661.m000924
Setaria italicaSi001388mSi035531m
Selaginella moellendorffii44066110234
Sorghum bicolorSb03g041630.1Sb01g043810.1
Thellungiella halophilaThhalv10004148mThhalv10010347m
Vitis viniferaGSVIVT01000105001
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny