| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036143 |
| Family | GH3 |
| Protein Properties | Length: 772 Molecular Weight: 83538.3 Isoelectric Point: 7.8948 |
| Chromosome | Chromosome/Scaffold: 09 Start: 2506229 End: 2510513 |
| Description | beta-xylosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH3 | 81 | 328 | 0 |
| AAVPRLGIGGYEWWSEALHGVSDVGPGAKFGGAFPGATSFPQVITTAASFNQSLWEEIGRVVSDEARAMYNGGVAGLTYWSPNVNILRDPRWGRGQETPG EDPVVVGKYAASYVRGLQGNGPSRLKVAACCKHYTAYDLDNWNGVDRFHFNAKVTQQDLEDTYNVPFRACVYDGNVASVMCSYNQVNGKPTCADENRLKN TIRGQWQLNGYIVSDCDSVDVFFNQQHYTATPEEAAAASIKAGLDLDC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 772 Download |
| MSCNNRELLI GNKVVVTLVF LLCLVHSSES LRPLFACDPA NELTRTLRFC QVNLPVRVRV 60 QDLIGRLTLQ EKIRLLVNNA AAVPRLGIGG YEWWSEALHG VSDVGPGAKF GGAFPGATSF 120 PQVITTAASF NQSLWEEIGR VVSDEARAMY NGGVAGLTYW SPNVNILRDP RWGRGQETPG 180 EDPVVVGKYA ASYVRGLQGN GPSRLKVAAC CKHYTAYDLD NWNGVDRFHF NAKVTQQDLE 240 DTYNVPFRAC VYDGNVASVM CSYNQVNGKP TCADENRLKN TIRGQWQLNG YIVSDCDSVD 300 VFFNQQHYTA TPEEAAAASI KAGLDLDCGP FLAIFTEGAV KQGLLTENDI NLALTNTITV 360 QMRLGMFDGN LGPYANLGPR DVCTPIHQHL ALEAAHQGIV LLKNDGRSLP LSPTRHRTVA 420 VIGPNSDVTE TMIGNYAGKA CAYTTPLQGI SRYARTLHQA GCSGVACAGN QGFGAAEMAA 480 READATVLVM GLDQSIEAET RDRTGLLLPG YQQDLVTRVA QASKGPVVLV LMSGGPIDVS 540 FAKNNPRVAA IIWAGYPGQA GGAAIADIIF GAVNPGGKLP MTWYPQDYVV KVPMTLMAMR 600 ASGDYPGRTY RFYKGRVVFP FGFGLSYTTF THSLAQNPLA QLSVSPYKLN SAIFNSSSNS 660 IKVSHANCET FPKMPIHVEV SNTGEFDGTH TVFVFAEPPR NGIKGLGVNK QLIAFEKVHV 720 TAGAKRTVQV DVDACKHLGV VDEYGKRRIP MGEHKLHIGD LKHTILVQPQ L* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam01915 | Glyco_hydro_3_C | 1.0e-51 | 399 | 629 | 237 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
| COG1472 | BglX | 2.0e-53 | 78 | 450 | 378 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
| pfam00933 | Glyco_hydro_3 | 1.0e-61 | 50 | 360 | 317 | + Glycosyl hydrolase family 3 N terminal domain. | ||
| PRK15098 | PRK15098 | 9.0e-65 | 118 | 736 | 668 | + beta-D-glucoside glucohydrolase; Provisional | ||
| PLN03080 | PLN03080 | 0 | 27 | 768 | 764 | + Probable beta-xylosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS17751.2 | 0 | 4 | 768 | 6 | 764 | beta xylosidase [Fragaria x ananassa] |
| DDBJ | BAG28345.1 | 0 | 29 | 762 | 23 | 762 | arabinofuranosidase [Citrus unshiu] |
| RefSeq | NP_199747.1 | 0 | 1 | 771 | 1 | 774 | BXL1 (BETA-XYLOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | XP_002316021.1 | 0 | 26 | 771 | 20 | 763 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519194.1 | 0 | 26 | 771 | 34 | 777 | Periplasmic beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3u48_B | 0 | 118 | 732 | 91 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u48_A | 0 | 118 | 732 | 91 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u4a_B | 0 | 118 | 732 | 91 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 3u4a_A | 0 | 118 | 732 | 91 | 696 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| PDB | 2x41_A | 3e-39 | 59 | 633 | 3 | 606 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
