y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra036155 |
Family | PL1 |
Protein Properties | Length: 419 Molecular Weight: 46560.5 Isoelectric Point: 8.1329 |
Chromosome | Chromosome/Scaffold: 09 Start: 2420593 End: 2424747 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 131 | 337 | 0 |
VIQDEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACVTIQYVTNIIIHGVHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWI DHNSLSSCADGLIDAVMSSTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINS QGNRYLA |
Full Sequence |
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Protein Sequence Length: 419 Download |
MGITQVLVLF ASALLLSSML FTGVDSTRSN ETWHEHAVEN PDEVAAMVDM SIRNSTERRR 60 LGYFSCSTGN PIDDCWRCDR KWKLRRKHLA DCSIGFGRNA IGGRDGRYYV VSDPGDDNPV 120 NPTPGTLRHA VIQDEPLWIV FKRDMVITLK EELIMNSFKT IDGRGVNVHI ANGACVTIQY 180 VTNIIIHGVH IHDCKPTGNA MVRSSPSHYG WRTMADGDGI SIFGSSHIWI DHNSLSSCAD 240 GLIDAVMSST AITISNNYFT HHNEVMLLGH SDTYTRDKVM QVTIAYNHFG EGLIQRMPRC 300 RHGYFHVVNN DYTHWEMYAI GGSASPTINS QGNRYLAPSN RFAKEVTKRD YAGEWQWKHW 360 NWRSEGDLFL NGAFFTRSGS GLGASYARAS SLAAKSSSLV GVITSNAGAL NCRVGRRC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-26 | 157 | 333 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-68 | 150 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-77 | 144 | 339 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61584.1 | 0 | 1 | 418 | 1 | 416 | putative pectate lyase [Arabidopsis thaliana] |
GenBank | AAM63307.1 | 0 | 1 | 418 | 1 | 417 | pectate lyase [Arabidopsis thaliana] |
DDBJ | BAB10313.1 | 0 | 26 | 418 | 2 | 393 | pectate lyase [Arabidopsis thaliana] |
RefSeq | NP_187357.1 | 0 | 1 | 418 | 1 | 416 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | NP_568705.1 | 0 | 1 | 418 | 1 | 417 | pectate lyase family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 139 | 337 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000004 | 160 | 312 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1jta_A | 0.000000000007 | 160 | 409 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |