| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036219 |
| Family | CE8 |
| Protein Properties | Length: 318 Molecular Weight: 35569.9 Isoelectric Point: 6.6792 |
| Chromosome | Chromosome/Scaffold: 09 Start: 2138001 End: 2139671 |
| Description | pectin methylesterase 31 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 7 | 295 | 0 |
| VTVAQDGSGDYCSVQEAVDSVPLGNTCRTVICLSPGIYRQPVYVAKKKNFITFTGMSPETTVLTWNNTASKNEHHQEARVIGKGTFASGTVIVEGDDFIA ENITFENSSPQGSGQAVAIRVSADRCAFYNCRFLSWQDTLYLHSRKQYLKDCYVEGSVDFIFGNSTALLEHCHIHCKSPGYITAQSRKSPQESTGYVFLR CVITGNGQSGYMYLGRPWRPFGRVVFAYTYMDACIRNVGWHNWGNEDNETSACFYEYRCFGPGSCLSERVTWSRELMDEEVGQFLHYCF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 318 Download |
| MATSRTVTVA QDGSGDYCSV QEAVDSVPLG NTCRTVICLS PGIYRQPVYV AKKKNFITFT 60 GMSPETTVLT WNNTASKNEH HQEARVIGKG TFASGTVIVE GDDFIAENIT FENSSPQGSG 120 QAVAIRVSAD RCAFYNCRFL SWQDTLYLHS RKQYLKDCYV EGSVDFIFGN STALLEHCHI 180 HCKSPGYITA QSRKSPQEST GYVFLRCVIT GNGQSGYMYL GRPWRPFGRV VFAYTYMDAC 240 IRNVGWHNWG NEDNETSACF YEYRCFGPGS CLSERVTWSR ELMDEEVGQF LHYCFVDPDQ 300 DRPWLCPRTG GRTPCSA* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 4.0e-93 | 2 | 307 | 314 | + pectinesterase family protein | ||
| pfam01095 | Pectinesterase | 6.0e-94 | 7 | 291 | 307 | + Pectinesterase. | ||
| PLN02432 | PLN02432 | 7.0e-96 | 1 | 305 | 307 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 4.0e-106 | 4 | 305 | 310 | + pectinesterase family protein | ||
| PLN02773 | PLN02773 | 0 | 1 | 317 | 317 | + pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN08265.1 | 0 | 8 | 317 | 7 | 316 | Pectinesterase [Medicago truncatula] |
| RefSeq | NP_566842.1 | 0 | 1 | 317 | 1 | 317 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002283941.1 | 0 | 4 | 317 | 3 | 316 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305315.1 | 0 | 4 | 317 | 3 | 316 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530008.1 | 0 | 5 | 317 | 4 | 316 | Pectinesterase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 7 | 278 | 9 | 281 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 9 | 305 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 7e-23 | 17 | 292 | 18 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 7e-23 | 17 | 292 | 18 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 1e-22 | 17 | 292 | 18 | 330 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX092395 | 260 | 1 | 260 | 0 |
| DK458175 | 255 | 1 | 255 | 0 |
| EG480743 | 273 | 1 | 273 | 0 |
| DY292725 | 304 | 7 | 310 | 0 |
| EX092395 | 21 | 260 | 280 | 0.003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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