| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036278 |
| Family | CE8 |
| Protein Properties | Length: 573 Molecular Weight: 63464.4 Isoelectric Point: 9.0045 |
| Chromosome | Chromosome/Scaffold: 09 Start: 256840 End: 259370 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 258 | 553 | 0 |
| VTVNQNGTGNFTTITDAVAAAPNKTDGTAGYFVIYVTSGVYDENVLIAKNKRYLMMIGDGINRTIITGNRSVVDGWTTFNSATFAVTSPNFVAVNMTFRN TAGPEKHQAVALRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYPRQALPNQFNAITAQGRTDPNQNTGTSIHNCT IRPADDLASSNYTVKTYLGRPWKEYSRTVFMQSYLDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSSTTNRVVWPGYHVINSTDANNFTVSNFL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 573 Download |
| MTFPKLLLIT LFLSLQTLFI ASQILTSSSN SSSSICKTTP DPKFCKSVFP QTSQGDVRDY 60 GRFSLRKSLT QSRKFTRTID KYLKRNKGLL SHSAVGALQD CRDLASLTTD YLTTSFETVN 120 VTASSKTLSF SKADDIQTLL SAALTNEQTC LDGVNTAASS SWTIRNGVAL PLINDTKLFS 180 VSLALFTKGW VPKKKKQTGY SWAHPKNTHS HNKPLRHFRN GALPLKMTEQ TRAVYESLSR 240 RKLADDNDDN TVLVSDIVTV NQNGTGNFTT ITDAVAAAPN KTDGTAGYFV IYVTSGVYDE 300 NVLIAKNKRY LMMIGDGINR TIITGNRSVV DGWTTFNSAT FAVTSPNFVA VNMTFRNTAG 360 PEKHQAVALR SSADLSIFYS CSFEAYQDTL YTHSLRQFYR ECDIYGTVDF IFGNAAVVLQ 420 NCNLYPRQAL PNQFNAITAQ GRTDPNQNTG TSIHNCTIRP ADDLASSNYT VKTYLGRPWK 480 EYSRTVFMQS YLDGFVEPVG WREWNGDFAL STLYYAEYNN TGPGSSTTNR VVWPGYHVIN 540 STDANNFTVS NFLFGDEWMV QSGVPYMAGL LS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 3.0e-154 | 35 | 570 | 546 | + pectinesterase | ||
| PLN02468 | PLN02468 | 3.0e-154 | 35 | 570 | 541 | + putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 0 | 35 | 572 | 539 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN03043 | PLN03043 | 0 | 36 | 571 | 551 | + Probable pectinesterase/pectinesterase inhibitor; Provisional | ||
| pfam01095 | Pectinesterase | 0 | 258 | 556 | 300 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL87311.1 | 0 | 5 | 572 | 5 | 573 | unknown protein [Arabidopsis thaliana] |
| DDBJ | BAF00855.1 | 0 | 1 | 572 | 1 | 579 | hypothetical protein [Arabidopsis thaliana] |
| RefSeq | NP_563662.1 | 0 | 1 | 572 | 1 | 579 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567227.1 | 0 | 5 | 572 | 5 | 573 | ATPMEPCRB; pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002523112.1 | 0 | 27 | 571 | 35 | 566 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 260 | 570 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 258 | 570 | 9 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 2e-22 | 257 | 506 | 7 | 284 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 2e-22 | 257 | 506 | 7 | 284 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 2e-22 | 257 | 506 | 7 | 284 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
