| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036279 |
| Family | CE8 |
| Protein Properties | Length: 517 Molecular Weight: 57034.6 Isoelectric Point: 5.5037 |
| Chromosome | Chromosome/Scaffold: 09 Start: 275581 End: 278816 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 215 | 501 | 0 |
| LVVSRNGTGNFTTIGEAVSAAPNLSETRFVIYIKCGVYFENIEIPREKTTIMFLGDGIGQTVIKANRSGADGWTAFNSATVGVRGSGFIAKDISFVNDAG PTKHQAVALRSGSDLSAFYRCSFESYQDTIYRLGSRTGVSMLVGQTLTMFQNCSLYARRPNPNQRITYTAQGREDPRQPTGISIINCKILAAPDLVPVKT DFKAYLGRPWQLYSRTVIIKSFIDDLVDPAGWLQWKDDFALDTLYYGEYMNEGPGSNMTNRVKWPGFKRIETAVEATQFTVGPFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 517 Download |
| MIHLRKVPKY IVTLSLLLPV ALLLIFLSTV VSSHSPTLHK TQHLTSSGNT TDLLVATLNQ 60 TISKVNLSSS NFSELQTSLG SNLTHRDRCA FGDCLELLDD TVLDLIAAVS ELQSPYPVFN 120 SVSMLLSAAM TNTRTCLDGF ASSDDDEDEN TYGNSKTYGL AESMRESLYN ISRHVRESLA 180 MLENIPGKLE NDVGFPTWVD RKLLQDPTDE TKIDLVVSRN GTGNFTTIGE AVSAAPNLSE 240 TRFVIYIKCG VYFENIEIPR EKTTIMFLGD GIGQTVIKAN RSGADGWTAF NSATVGVRGS 300 GFIAKDISFV NDAGPTKHQA VALRSGSDLS AFYRCSFESY QDTIYRLGSR TGVSMLVGQT 360 LTMFQNCSLY ARRPNPNQRI TYTAQGREDP RQPTGISIIN CKILAAPDLV PVKTDFKAYL 420 GRPWQLYSRT VIIKSFIDDL VDPAGWLQWK DDFALDTLYY GEYMNEGPGS NMTNRVKWPG 480 FKRIETAVEA TQFTVGPFID GNKWLNSTGI PFTLDL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02484 | PLN02484 | 4.0e-141 | 47 | 512 | 503 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 5.0e-142 | 85 | 513 | 449 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02201 | PLN02201 | 9.0e-145 | 55 | 516 | 495 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 1.0e-162 | 214 | 502 | 298 | + Pectinesterase. | ||
| PLN02933 | PLN02933 | 0 | 28 | 516 | 509 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ68111.1 | 0 | 5 | 512 | 6 | 518 | pectinesterase [Brassica napus] |
| RefSeq | NP_192139.1 | 0 | 33 | 514 | 34 | 530 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_192141.1 | 0 | 39 | 516 | 26 | 518 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002301486.1 | 0 | 87 | 516 | 7 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523113.1 | 0 | 52 | 516 | 79 | 556 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 214 | 516 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 214 | 512 | 4 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 1e-16 | 209 | 470 | 27 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.00000000008 | 211 | 425 | 2 | 246 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.00000000008 | 211 | 425 | 2 | 246 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
