| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036280 |
| Family | CE8 |
| Protein Properties | Length: 523 Molecular Weight: 58096.1 Isoelectric Point: 8.1366 |
| Chromosome | Chromosome/Scaffold: 09 Start: 280484 End: 282926 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 214 | 507 | 0 |
| LMVAQDGTGNFTTINDAVSAAPTSSVTRFMIYIKRGVYFENVEIPKNKTIIMFVGDGIGRTVIKANRRKGNLGTFQTATVGVKGEGFIAKDISFVNFAGP SPQAVALRSGSDHSAFYRCSFEGYQDTLYVYSGKQFYRECDIYGTVDFICGNAAAVFQNCSLFARKPNPGQKIVYTAQSRTCPNQSTGISMINCRFLAAP DLIPVKGSFEAYLGRPWKNFSRTIIMKSFIDDLVVPAGWLEWNGNFALETLHYGEYMNEGPGSNITNRVKWPGYRPILNETEATQFTVGPFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 523 Download |
| MHNPSRKTSK HINLNLLALT FHLIFLIPTV HSRSTQRLAE PNNITELIVA TLNQTILNVN 60 VSYTTFYNLQ KRLGPNIARR YRCAFEDCLG LLDDTIFDLE TAISKLQTSS LGAHDVNMLL 120 SDAMTNQDTC LEGFKTSGIH EKNSDNTYKL TDSLKDSILK ISSNLSNSLG MLQKIPGHEL 180 SPEAYEVDVE FPSWVLENDK RRLHAPVEKT KFNLMVAQDG TGNFTTINDA VSAAPTSSVT 240 RFMIYIKRGV YFENVEIPKN KTIIMFVGDG IGRTVIKANR RKGNLGTFQT ATVGVKGEGF 300 IAKDISFVNF AGPSPQAVAL RSGSDHSAFY RCSFEGYQDT LYVYSGKQFY RECDIYGTVD 360 FICGNAAAVF QNCSLFARKP NPGQKIVYTA QSRTCPNQST GISMINCRFL AAPDLIPVKG 420 SFEAYLGRPW KNFSRTIIMK SFIDDLVVPA GWLEWNGNFA LETLHYGEYM NEGPGSNITN 480 RVKWPGYRPI LNETEATQFT VGPFIDGGTW LNSTGIPFNT GL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02201 | PLN02201 | 9.0e-150 | 79 | 522 | 455 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 5.0e-152 | 1 | 522 | 558 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 6.0e-162 | 76 | 522 | 455 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02933 | PLN02933 | 0 | 1 | 522 | 531 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 213 | 507 | 297 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACJ68111.1 | 0 | 1 | 518 | 1 | 518 | pectinesterase [Brassica napus] |
| RefSeq | NP_192139.1 | 0 | 28 | 522 | 37 | 532 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_192141.1 | 0 | 32 | 522 | 25 | 518 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002301486.1 | 0 | 72 | 518 | 2 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523113.1 | 0 | 43 | 522 | 76 | 556 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 213 | 522 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 213 | 522 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 7e-25 | 210 | 510 | 2 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 7e-25 | 210 | 510 | 2 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 7e-25 | 210 | 510 | 2 | 337 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
