| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036281 |
| Family | GH9 |
| Protein Properties | Length: 519 Molecular Weight: 57345.2 Isoelectric Point: 9.1674 |
| Chromosome | Chromosome/Scaffold: 09 Start: 288452 End: 290986 |
| Description | glycosyl hydrolase 9B13 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH9 | 54 | 509 | 0 |
| NYKDALTKSILFFEGQRSGKLPHNQRMTWRRDSGLSDGSALHVDLVGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGGLMKSELPNAKAAIRWATDYLLK ATARPDTIYVQVGDANKDHSCWERPEDMDTQRSVFKVDKNTPGSDVAAETAAALAAAAIVFKKSDPSYSKILLKRAVRVFAFADKYRGTYSAGLKPEVCP FYCSYSGYQDELLWGAAWLQKATKNVKYLNYIKMNGQVLGAAEYDNTFGWDNKHAGARILLTKAFLVQKMKTLSEYKGHADNFICSVIPGAPFSSSQYTP GGLLFKMSDANMQYVTSTSFLLLTYAKYLTSARTVVHCGGSVYTPGRLRSIAKKQVDYLLGDNPLGMSYMVGYGPKFPRRIHHRGSSLPCVASHPAKIQC HEGFSILNSQSPNPNILDGAVVGGPDQHDRFPDERTDYEQSEPATYINAPLVGALA | |||
| Full Sequence |
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| Protein Sequence Length: 519 Download |
| MALLFFSSSS FDFRVFIVLS FFIVLCNGSS YSSSSPSSSL LSTHHHRHHI AKHNYKDALT 60 KSILFFEGQR SGKLPHNQRM TWRRDSGLSD GSALHVDLVG GYYDAGDNIK FGFPMAFTTT 120 MLSWSVIEFG GLMKSELPNA KAAIRWATDY LLKATARPDT IYVQVGDANK DHSCWERPED 180 MDTQRSVFKV DKNTPGSDVA AETAAALAAA AIVFKKSDPS YSKILLKRAV RVFAFADKYR 240 GTYSAGLKPE VCPFYCSYSG YQDELLWGAA WLQKATKNVK YLNYIKMNGQ VLGAAEYDNT 300 FGWDNKHAGA RILLTKAFLV QKMKTLSEYK GHADNFICSV IPGAPFSSSQ YTPGGLLFKM 360 SDANMQYVTS TSFLLLTYAK YLTSARTVVH CGGSVYTPGR LRSIAKKQVD YLLGDNPLGM 420 SYMVGYGPKF PRRIHHRGSS LPCVASHPAK IQCHEGFSIL NSQSPNPNIL DGAVVGGPDQ 480 HDRFPDERTD YEQSEPATYI NAPLVGALAY FAHSYGQL* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02266 | PLN02266 | 0 | 14 | 518 | 506 | + endoglucanase | ||
| PLN02308 | PLN02308 | 0 | 51 | 514 | 465 | + endoglucanase | ||
| pfam00759 | Glyco_hydro_9 | 0 | 54 | 509 | 463 | + Glycosyl hydrolase family 9. | ||
| PLN03009 | PLN03009 | 0 | 51 | 512 | 465 | + cellulase | ||
| PLN02175 | PLN02175 | 0 | 51 | 512 | 463 | + endoglucanase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_192138.1 | 0 | 3 | 518 | 4 | 516 | AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13); catalytic/ hydrolase, hydrolyzing O-glycosyl compounds |
| RefSeq | XP_002271736.1 | 0 | 44 | 518 | 37 | 511 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301487.1 | 0 | 6 | 518 | 1 | 511 | glycosyl hydrolase family 9 [Populus trichocarpa] |
| RefSeq | XP_002320998.1 | 0 | 6 | 518 | 3 | 510 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523114.1 | 0 | 50 | 518 | 42 | 510 | endo-1,4-beta-glucanase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ksd_A | 0 | 53 | 509 | 3 | 426 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 1ksc_A | 0 | 53 | 509 | 3 | 426 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
| PDB | 1ks8_A | 0 | 53 | 509 | 3 | 426 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 4tf4_B | 0 | 54 | 516 | 5 | 445 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 4tf4_A | 0 | 54 | 516 | 5 | 445 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES791832 | 308 | 212 | 519 | 0 |
| CO125126 | 297 | 82 | 378 | 0 |
| EX906308 | 256 | 128 | 383 | 0 |
| EV243304 | 288 | 232 | 519 | 0 |
| EV183959 | 244 | 243 | 486 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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