| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036392 |
| Family | GH10 |
| Protein Properties | Length: 525 Molecular Weight: 59845.2 Isoelectric Point: 5.7612 |
| Chromosome | Chromosome/Scaffold: 07 Start: 2072499 End: 2074901 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH10 | 159 | 418 | 0 |
| RPSFLLGCAMNYRILESDSYREWFVSRFRLTSFTNEMKWYTTEEVRGQENYTLADAMMQLAEENKVLVKGHTVLWDDKKWQPIWVKSITDSDDLKNVTLN RMNSVMKRYKGRLIGWDVINENLHYSYYEDMLGKNASAMIYSLASKIDPDIPLFINEYNTVEYAKEGVGSPINVKNKMEEIVSYPGNMNIKGGIGAQAHF VPAQPNLPYMRSALDTLGSLGFPVWLTEVDMPKCPDQVKYMEEVLREAYSHPAVQGIILY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 525 Download |
| MELPQTINTG EGFQELKIIE NGKVVERVNL QKGGIYSISA WVKLRNEKER AVRITLRGKN 60 VRYVDGGQVI AKKGCWSLLK GGFIVNVSAP VDIFFKSDDS AAAEINIQNV RLQRFNKTQW 120 RLQQDQVIEK IRKSKVRFQV SFQNKSTVEG SLISIKQIRP SFLLGCAMNY RILESDSYRE 180 WFVSRFRLTS FTNEMKWYTT EEVRGQENYT LADAMMQLAE ENKVLVKGHT VLWDDKKWQP 240 IWVKSITDSD DLKNVTLNRM NSVMKRYKGR LIGWDVINEN LHYSYYEDML GKNASAMIYS 300 LASKIDPDIP LFINEYNTVE YAKEGVGSPI NVKNKMEEIV SYPGNMNIKG GIGAQAHFVP 360 AQPNLPYMRS ALDTLGSLGF PVWLTEVDMP KCPDQVKYME EVLREAYSHP AVQGIILYAG 420 PEMSGFNKLT LADNDFNNTE AGDLIDKLLQ EWQQEPAEIP VEYHEHNDEE QSRIIGFSPE 480 VSLLHGHYTV TVTNPSMKNF STTFSLEVTT ETGQLQVVQL ELDV* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 9.0e-30 | 193 | 389 | 218 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 5.0e-42 | 154 | 415 | 283 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-73 | 195 | 445 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC69373.1 | 0 | 1 | 524 | 1 | 552 | 1,4-beta-xylan endohydrolase [Arabidopsis thaliana] |
| GenBank | AAQ65190.1 | 0 | 1 | 524 | 1 | 529 | At2g14690 [Arabidopsis thaliana] |
| RefSeq | NP_179076.3 | 0 | 1 | 524 | 42 | 570 | endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] |
| RefSeq | NP_195107.1 | 0 | 14 | 524 | 25 | 536 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | NP_680761.1 | 0 | 14 | 520 | 65 | 566 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1tux_A | 1e-25 | 159 | 449 | 13 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1x_A | 2e-25 | 151 | 451 | 5 | 303 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1i1w_A | 2e-25 | 151 | 451 | 5 | 303 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 1ta3_B | 4e-25 | 164 | 405 | 17 | 259 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 2bnj_A | 6e-25 | 151 | 451 | 5 | 303 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV212677 | 228 | 169 | 396 | 0 |
| EV212989 | 218 | 132 | 349 | 0 |
| DV141191 | 251 | 153 | 403 | 0 |
| EX266128 | 275 | 178 | 452 | 0 |
| ES830806 | 293 | 42 | 333 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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