| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036494 |
| Family | GH5 |
| Protein Properties | Length: 290 Molecular Weight: 32724.1 Isoelectric Point: 6.9537 |
| Chromosome | Chromosome/Scaffold: 07 Start: 75193 End: 76363 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 43 | 288 | 1.2e-25 |
| DGKPLYVNGWNSYWFMDHAVNDHSRHRVGAMLQAGSKMGLTVCRTWAFNDGGYNALQISPGRFDERVFKALDHVIAEAKTHGVRLLLSLVNNLQAYGGKT QYVNWAWQEGVGLSSSNDSFFFDPSIRRYFKNYLTVLLTRKNSITGIEYRNDPTIFAWELINEPRCFTDISGDTLQDWINEMTAFIKSIDNKHLLTVGLE GFYGPKSPKRLTVNPERWASELGSDFVRNSESPNIDFASVHIYPDH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 290 Download |
| MGPVIPILGF LTCAAFMYLS LGFRGGEPEV GFVSRNGTQF VLDGKPLYVN GWNSYWFMDH 60 AVNDHSRHRV GAMLQAGSKM GLTVCRTWAF NDGGYNALQI SPGRFDERVF KALDHVIAEA 120 KTHGVRLLLS LVNNLQAYGG KTQYVNWAWQ EGVGLSSSND SFFFDPSIRR YFKNYLTVLL 180 TRKNSITGIE YRNDPTIFAW ELINEPRCFT DISGDTLQDW INEMTAFIKS IDNKHLLTVG 240 LEGFYGPKSP KRLTVNPERW ASELGSDFVR NSESPNIDFA SVHIYPDHW* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12876 | Cellulase-like | 0.003 | 190 | 285 | 105 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| COG3934 | COG3934 | 1.0e-19 | 104 | 289 | 186 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD20927.1 | 0 | 2 | 289 | 8 | 269 | (1-4)-beta-mannan endohydrolase [Arabidopsis thaliana] |
| GenBank | ABK95966.1 | 0 | 2 | 289 | 9 | 301 | unknown [Populus trichocarpa] |
| RefSeq | NP_179660.2 | 0 | 2 | 289 | 8 | 299 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | NP_194561.1 | 0 | 3 | 289 | 8 | 298 | glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330687.1 | 0 | 2 | 289 | 9 | 301 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 32 | 289 | 6 | 257 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 9.94922e-44 | 31 | 289 | 13 | 274 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 9.94922e-44 | 31 | 289 | 13 | 274 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 9.94922e-44 | 31 | 289 | 13 | 274 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 9.94922e-44 | 31 | 289 | 13 | 274 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
