| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036610 |
| Family | CE8 |
| Protein Properties | Length: 702 Molecular Weight: 74766.9 Isoelectric Point: 6.2137 |
| Chromosome | Chromosome/Scaffold: 09 Start: 2010984 End: 2013507 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 251 | 546 | 0 |
| DMVVAQDGSGQYKTINEALRNVPKKNNATFVVHIKSGTYKEYVQVNRTMPNLVFIGDGPTKSIISGNKSFKDGITTYRTATVAIIGDNFIAKNMGFENTA GALNYQAVAVRVLSDESIFYNCRFDGYQDTLYAHSHRQFYRDCTITGTIDFLFGDAAAVFQNCTLLVRKPLANQACPITAHGRKDPRESTGFVLQGCTIA GEADYLAVKETSKAYLGRPWKEYSKTIIMETFIPDFIPGEGWSPWQGNFGLDTLFYSEVRNTGPGAAVANRVTWQGIKKLSEEEIVEYTPAKYIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 702 Download |
| MAFGSYDDDS KRKRRYVVIS ISSVLLVSMV VAVTIGVSVN SDNGTKEEIT ASVKAIKDVC 60 APTDYKKTCE DTLRKDAKDT SDPLELVRTA FNATMKQISN VAKKSLTMIE LQKDPRTKMA 120 LDQCTELMDF AIGELSKSFD ELGRFELHKV DDALIKLKVW LSATISHEQT CLDGFQGTQG 180 DAGETMKKAL KTAVQLTHNG LAMVSEMLNY LGQMELPEMN SRRLLSQEFP SWVDGRVRRL 240 LNAPLSEVKP DMVVAQDGSG QYKTINEALR NVPKKNNATF VVHIKSGTYK EYVQVNRTMP 300 NLVFIGDGPT KSIISGNKSF KDGITTYRTA TVAIIGDNFI AKNMGFENTA GALNYQAVAV 360 RVLSDESIFY NCRFDGYQDT LYAHSHRQFY RDCTITGTID FLFGDAAAVF QNCTLLVRKP 420 LANQACPITA HGRKDPREST GFVLQGCTIA GEADYLAVKE TSKAYLGRPW KEYSKTIIME 480 TFIPDFIPGE GWSPWQGNFG LDTLFYSEVR NTGPGAAVAN RVTWQGIKKL SEEEIVEYTP 540 AKYIQGDDWI PGKGVPYTPG FFAGNGSATG AGSSNSTTTG SSEPGSTNST TGSDSPAASP 600 GASPVTESGL GSPSATPSAS PTASPSASPS ATPSASPSAS PSASPSATPS VSPSAFPSAT 660 PSSSPSVSPS TAPSASPSAT PSASPSASPS VSPSISPESS V* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 1.0e-155 | 35 | 557 | 550 | + pectinesterase | ||
| PLN02217 | PLN02217 | 0 | 1 | 562 | 563 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02990 | PLN02990 | 0 | 38 | 561 | 535 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 0 | 36 | 562 | 541 | + Putative pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 251 | 547 | 298 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC42986.1 | 0 | 1 | 680 | 1 | 652 | putative pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_187212.1 | 0 | 1 | 680 | 1 | 652 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_198139.1 | 0 | 1 | 687 | 1 | 679 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002314364.1 | 0 | 46 | 563 | 50 | 570 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512459.1 | 0 | 5 | 559 | 2 | 577 | Pectinesterase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 246 | 561 | 3 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 248 | 562 | 1 | 316 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 2e-20 | 262 | 551 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 2e-20 | 262 | 551 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 7e-20 | 262 | 551 | 18 | 339 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
