y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra036680 |
Family | GT47 |
Protein Properties | Length: 600 Molecular Weight: 68393.4 Isoelectric Point: 6.7344 |
Chromosome | Chromosome/Scaffold: 09 Start: 5693299 End: 5695098 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 133 | 472 | 0 |
GKYIYVHDLPSRFNEDMLRDCKKLSLWTNMCKFTTNAGLGPPLENIEGVFSDEGWYATNQFAVDVIFSNRMKQYKCLTNDSSLAAAIFVPFYAGFDVARY LWGYNISTRDAASLDLVDWLTQRPEWEIMRGKDHFLVAGRITWDFRRLSEEENDWGNKLLFLPAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDSEVF DWQERMRNLDRKWLFSFAGAPRPDNPKSIRGQIIDQCRNSNVGKLLECDFGESKCHSPSSIMQMFQGSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPG SAYTQYTWHLPKNYSTYSVFIPEDDIRKRNMSIEERLLRI |
Full Sequence |
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Protein Sequence Length: 600 Download |
MVPRVAMRRR AAEVPPTEPT EKGNGKSHTN RICLLVSLSL FFWALLLYFH FVVIGSSTNI 60 ENQIHLQPQP QPSSSSTSLR VHKFDPPKEK DPLDKPILAT TSTFKPPGTA EKQEFPFVRA 120 LKTVDNKSDP CGGKYIYVHD LPSRFNEDML RDCKKLSLWT NMCKFTTNAG LGPPLENIEG 180 VFSDEGWYAT NQFAVDVIFS NRMKQYKCLT NDSSLAAAIF VPFYAGFDVA RYLWGYNIST 240 RDAASLDLVD WLTQRPEWEI MRGKDHFLVA GRITWDFRRL SEEENDWGNK LLFLPAAKNM 300 SMLVVESSPW NANDFGIPYP TYFHPAKDSE VFDWQERMRN LDRKWLFSFA GAPRPDNPKS 360 IRGQIIDQCR NSNVGKLLEC DFGESKCHSP SSIMQMFQGS LFCLQPQGDS YTRRSAFDSM 420 LAGCIPVFFH PGSAYTQYTW HLPKNYSTYS VFIPEDDIRK RNMSIEERLL RIPPEQVKTM 480 RENVISLIPG LIYADPRSEL ETLKDAFDVS VQAVIDKVTR LRKNMIEGRT EYDNFVEENS 540 WKYALLEDGQ REAGGHVWDP FFSKPKPGED SGNDGNGGTT ISADAAKNSW KSEQRDKTQ* 600 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-71 | 130 | 472 | 358 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD21751.1 | 0 | 21 | 599 | 2 | 600 | unknown protein [Arabidopsis thaliana] |
GenBank | ACY08857.1 | 0 | 7 | 598 | 1 | 617 | xyloglucan galactosyltransferase [Eucalyptus grandis] |
DDBJ | BAE98519.1 | 0 | 1 | 599 | 1 | 619 | hypothetical protein [Arabidopsis thaliana] |
DDBJ | BAH19963.1 | 0 | 130 | 599 | 1 | 470 | AT2G20370 [Arabidopsis thaliana] |
RefSeq | NP_179627.2 | 0 | 1 | 599 | 1 | 619 | MUR3 (MURUS 3); catalytic/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |