| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036718 |
| Family | CBM43 |
| Protein Properties | Length: 478 Molecular Weight: 52123.3 Isoelectric Point: 4.6302 |
| Chromosome | Chromosome/Scaffold: 09 Start: 5455292 End: 5457011 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 366 | 446 | 4.3e-24 |
| WCMFNPNAKDLTKLAQNIDFACTFSDCTALGYGSSCNGLDANGNASYAFNMYFQVKNQDEEACIFQGLATVTTQNISQGQC | |||
| GH17 | 25 | 343 | 0 |
| LGVNWGTMATHKLPPKTVVQMLKDNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQLKVMGSYDRAKDWVRKNVTRYNFNGGVNITFVAVGNEPFLKS YNGTFINLTFPALQNIQNALNEAGLGNSIKATVPLNADVYDSPVSDPVPSAGRFRPDILGQMTQIVDFLGKNNAPITINIYPFLSLYGNDDFPINYAFFD GAQPIDDHGVSYTNVFDANFDTLVSSLKAVGHGDMPIIVGEVGWPTEGDKHANNGEAYRFYNGLLPRLGTNKGTPLRPTYIEVYLFGLLDEDAKSIAPGA FERHWGLFRFDGQPKFPLD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 478 Download |
| MVNPLALLVG LTILLDPLSI MVDGLGVNWG TMATHKLPPK TVVQMLKDNN INKVKLFDAD 60 ETTMGALAGS GLEVMVAIPN DQLKVMGSYD RAKDWVRKNV TRYNFNGGVN ITFVAVGNEP 120 FLKSYNGTFI NLTFPALQNI QNALNEAGLG NSIKATVPLN ADVYDSPVSD PVPSAGRFRP 180 DILGQMTQIV DFLGKNNAPI TINIYPFLSL YGNDDFPINY AFFDGAQPID DHGVSYTNVF 240 DANFDTLVSS LKAVGHGDMP IIVGEVGWPT EGDKHANNGE AYRFYNGLLP RLGTNKGTPL 300 RPTYIEVYLF GLLDEDAKSI APGAFERHWG LFRFDGQPKF PLDLSGQGQN KLLIGARNVT 360 YLPNKWCMFN PNAKDLTKLA QNIDFACTFS DCTALGYGSS CNGLDANGNA SYAFNMYFQV 420 KNQDEEACIF QGLATVTTQN ISQGQCDFPV QIVASSSSYV SFSLVWLVAE VLLVLMF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.001 | 251 | 335 | 92 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-15 | 365 | 435 | 81 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-30 | 365 | 448 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 7.0e-71 | 25 | 343 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAD38251.1 | 0 | 32 | 476 | 1 | 445 | AC006193_7 Similar to glucan endo-1,3-beta-glucosidase precursor [Arabidopsis thaliana] |
| GenBank | AAS99718.1 | 0 | 26 | 476 | 26 | 476 | At1g64760 [Arabidopsis thaliana] |
| RefSeq | NP_176656.1 | 0 | 26 | 476 | 26 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | NP_179534.1 | 0 | 2 | 458 | 1 | 454 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002277003.1 | 0 | 22 | 452 | 22 | 453 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 1.4013e-45 | 25 | 345 | 3 | 315 | A Chain A, Nmr Structure Of Clostridium Perfringens Protein Cpe0013. Northeast Structural Genomics Target Cpr31 |
| PDB | 3ur8_A | 1.4013e-45 | 25 | 345 | 3 | 315 | A Chain A, Nmr Structure Of Clostridium Perfringens Protein Cpe0013. Northeast Structural Genomics Target Cpr31 |
| PDB | 3ur7_B | 1.4013e-45 | 25 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 1.4013e-45 | 25 | 345 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3f55_D | 1.4013e-45 | 25 | 345 | 2 | 316 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
