| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra036800 |
| Family | AA1 |
| Protein Properties | Length: 542 Molecular Weight: 60650.3 Isoelectric Point: 10.2541 |
| Chromosome | Chromosome/Scaffold: 09 Start: 25723174 End: 25725251 |
| Description | SKU5 similar 17 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA1 | 50 | 498 | 0 |
| QQVILINGQFPGPKLEVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNFTYKFQTKDQIGTYNYFPSTAFHKAAGGFGAINVY ARPRIPIPYLLPVSDFTLLIGDWFKTNHKTLQQRLDSGGVLPFPDGMLINGQTQTSFTGDQGKTYMLRISNVGLSSTFNFRIQGHKMKVVEVEGSHVIQN DYESLDVHVGQSLSLLVTLNQPPKDYYIVASTRFLRRKLNVTGLLRYSNSRFPASGAPPPLPPGELIWSMRQARTFRWNLTANAARPNPQGSFHYGKIKP TKSFVFSNSAPLINGKQRYAVNGVSYVNSETPVKLADHFNIAGVFSTNAIQSVPSNSRVTVATSVVQASLHDFLEIVFQNSEKSVQSWHLDGYDFWVVGF GSGQWTPAKRRLYNLGDALTRHTTQVYPNAWTTILLSLDNQGMWNMRSA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 542 Download |
| MARGKATSLL HILLLGSLLI SLVSVKGESP YKFYTWTVTY GIISPLGVPQ QVILINGQFP 60 GPKLEVVTND NIILNLINKL DQPFLLTWNG IKQRKNSWQD GVLGTNCPIP PNSNFTYKFQ 120 TKDQIGTYNY FPSTAFHKAA GGFGAINVYA RPRIPIPYLL PVSDFTLLIG DWFKTNHKTL 180 QQRLDSGGVL PFPDGMLING QTQTSFTGDQ GKTYMLRISN VGLSSTFNFR IQGHKMKVVE 240 VEGSHVIQND YESLDVHVGQ SLSLLVTLNQ PPKDYYIVAS TRFLRRKLNV TGLLRYSNSR 300 FPASGAPPPL PPGELIWSMR QARTFRWNLT ANAARPNPQG SFHYGKIKPT KSFVFSNSAP 360 LINGKQRYAV NGVSYVNSET PVKLADHFNI AGVFSTNAIQ SVPSNSRVTV ATSVVQASLH 420 DFLEIVFQNS EKSVQSWHLD GYDFWVVGFG SGQWTPAKRR LYNLGDALTR HTTQVYPNAW 480 TTILLSLDNQ GMWNMRSARW DRQYLGQQFY LKVWDPVKSL ANEYNPPDNL LRCGKAVGRH 540 L* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02835 | PLN02835 | 0 | 26 | 540 | 515 | + oxidoreductase | ||
| PLN02354 | PLN02354 | 0 | 26 | 538 | 523 | + copper ion binding / oxidoreductase | ||
| PLN02792 | PLN02792 | 0 | 26 | 541 | 521 | + oxidoreductase | ||
| PLN02991 | PLN02991 | 0 | 27 | 540 | 515 | + oxidoreductase | ||
| PLN02168 | PLN02168 | 0 | 29 | 535 | 520 | + copper ion binding / pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61328.1 | 0 | 23 | 541 | 28 | 546 | pectinesterase-like protein [Arabidopsis thaliana] |
| DDBJ | BAB08634.1 | 0 | 23 | 541 | 26 | 544 | pectinesterase like protein [Arabidopsis thaliana] |
| EMBL | CBI18560.1 | 0 | 5 | 540 | 2 | 534 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_569041.1 | 0 | 23 | 541 | 28 | 546 | sks17 (SKU5 Similar 17); copper ion binding / oxidoreductase [Arabidopsis thaliana] |
| RefSeq | XP_002270831.1 | 0 | 5 | 540 | 3 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 32 | 493 | 4 | 503 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1asq_A | 0 | 32 | 493 | 4 | 503 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1asp_B | 0 | 32 | 493 | 4 | 503 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1asp_A | 0 | 32 | 493 | 4 | 503 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 1aso_B | 0 | 32 | 493 | 4 | 503 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
