| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037005 |
| Family | GH28 |
| Protein Properties | Length: 478 Molecular Weight: 52473.9 Isoelectric Point: 7.7748 |
| Chromosome | Chromosome/Scaffold: 03 Start: 28999161 End: 29001640 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 103 | 449 | 0 |
| AEGGAQLNVPKGTWLSGSFNLTSNFTLFLEQGAVILGSKELEEWPIIEPLPSYGRGRERPGGRHISLIHGDNLTNVVITGENGTIDGQGKMWWELWWNRT LVHTRGHLIEIKNSHNILISNLTLLNSPFWTIHPVYCSNVVIRNMTILAPMNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDQYGMAMARPSTN IIIRRISGTTRTCSGVGIGSEMSGGIFNVTIQDIHVWDSAAGLRIKTDIGRGGYISNITISNVFLEKVKVSIRFSRGSNDHPDDKWNPKAMPRVKGIYIS NVVSVDSRKAPMLLGVEGASFQDICLRNVTIFGLPQSEKWKCKDVSG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 478 Download |
| MESEKTSVVS SIARPSWAFI VLAFTVLAIL SHQISSNSFL PLFIPTTTTR LHDPVTCSGF 60 YLHDPSPKRI VMSITDFGGV GDGKTSNTEA FRRAVQHLRA FAAEGGAQLN VPKGTWLSGS 120 FNLTSNFTLF LEQGAVILGS KELEEWPIIE PLPSYGRGRE RPGGRHISLI HGDNLTNVVI 180 TGENGTIDGQ GKMWWELWWN RTLVHTRGHL IEIKNSHNIL ISNLTLLNSP FWTIHPVYCS 240 NVVIRNMTIL APMNAPNTDG IDPDSSTNVC IEDCYIESGD DLVAVKSGWD QYGMAMARPS 300 TNIIIRRISG TTRTCSGVGI GSEMSGGIFN VTIQDIHVWD SAAGLRIKTD IGRGGYISNI 360 TISNVFLEKV KVSIRFSRGS NDHPDDKWNP KAMPRVKGIY ISNVVSVDSR KAPMLLGVEG 420 ASFQDICLRN VTIFGLPQSE KWKCKDVSGY ASDVFPVSCP QLLQRKGLVS QCEQMSF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 5.0e-15 | 184 | 453 | 286 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-17 | 72 | 435 | 376 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 5.0e-22 | 72 | 474 | 428 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-25 | 170 | 447 | 289 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 4.0e-49 | 15 | 430 | 446 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN76963.1 | 0 | 56 | 477 | 51 | 471 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI37530.1 | 0 | 56 | 462 | 62 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_195070.2 | 0 | 1 | 472 | 1 | 472 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002274138.1 | 0 | 56 | 462 | 62 | 467 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310517.1 | 0 | 56 | 462 | 20 | 425 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 61 | 435 | 17 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 61 | 435 | 17 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 61 | 435 | 17 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 61 | 435 | 17 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-24 | 116 | 448 | 52 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
