| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037429 |
| Family | GH28 |
| Protein Properties | Length: 445 Molecular Weight: 48116.9 Isoelectric Point: 4.9606 |
| Chromosome | Chromosome/Scaffold: 06 Start: 21509233 End: 21511163 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 68 | 417 | 0 |
| DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQVADPLPSYGRGIDLTGKRYMSLINGYMLHDVVVTGDNGTIDGQGLFWWDRFNSHS LKYSRPHLVEFVSSENVIVSNLTFLNAPEYTIHSVYCSHVYIHRVTANTSPESPYTVGIVPDSSDNVCIQDSTINMGYDAISLKSGWDEYGISYARPTAN VQIRGVHLRAASGSSISFGSEMSGGISDVVVLDAYMHNSLSGIAFRTTKGRGGYIKEIDVSNIHMVNVGTAFLANGSFGTHPDSGFDENAFPLVSHIRLH DIVGENISIAGDFFGTEESPFTSVVLSNISLSMTNSGSPDDDSWRCLYVE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 445 Download |
| MPVALVLLLA LSCLIQSNGA GNVCDLGRRP SSRPHSVSIL EFGAVGDGKT LNTLAFQNAV 60 FYLKSFADKG GAQLYVPPGR WLTGSFNLTS HLTLFLEKDA VILASQDPSH WQVADPLPSY 120 GRGIDLTGKR YMSLINGYML HDVVVTGDNG TIDGQGLFWW DRFNSHSLKY SRPHLVEFVS 180 SENVIVSNLT FLNAPEYTIH SVYCSHVYIH RVTANTSPES PYTVGIVPDS SDNVCIQDST 240 INMGYDAISL KSGWDEYGIS YARPTANVQI RGVHLRAASG SSISFGSEMS GGISDVVVLD 300 AYMHNSLSGI AFRTTKGRGG YIKEIDVSNI HMVNVGTAFL ANGSFGTHPD SGFDENAFPL 360 VSHIRLHDIV GENISIAGDF FGTEESPFTS VVLSNISLSM TNSGSPDDDS WRCLYVEGSS 420 ESVVPEPCYE LMSFESSYGR AEAL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 9.0e-14 | 30 | 429 | 412 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-19 | 142 | 416 | 284 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-20 | 34 | 398 | 382 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 8.0e-25 | 35 | 431 | 404 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 1.0e-41 | 29 | 398 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65366.1 | 0 | 65 | 441 | 2 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001032043.1 | 0 | 1 | 444 | 1 | 447 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566292.1 | 0 | 65 | 441 | 2 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680409.1 | 0 | 16 | 444 | 22 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_850525.1 | 0 | 1 | 441 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-27 | 28 | 325 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-27 | 28 | 325 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-27 | 28 | 325 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-27 | 28 | 325 | 19 | 341 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000003 | 81 | 416 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
