y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra037431 |
Family | GH28 |
Protein Properties | Length: 425 Molecular Weight: 46731.3 Isoelectric Point: 5.0056 |
Chromosome | Chromosome/Scaffold: 06 Start: 21501002 End: 21502660 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 397 | 0 |
AACNHQGRSKFYVPEGRFLVGEIQFKGPCRTESTMEVEITGDLIAPTGIKDFPSNQWIGFSQLNDIFLYGSTNLDGRGDVEAWKQKSCEDSKCDKLITSL SLDNVSNSIIENISLSNAKGFHFRLHSASNVTVHNVSISSPWDSPNTDGIHVHNSSFIYITNSTIGAGDDCVSISTGSLDVLVSGTHCGPGHGFSIGSLG KVKNEEEVRRIKFQNCTVNGADNGVRIKTWPTSPPSEASDITFEDILMINVSNPIIIDQEYCPSNSCNTTSASLVKLSNIEFKNIRGTYRSDFGVNLRCS SVVACENITLIDVNLNGTNSTYKT |
Full Sequence |
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Protein Sequence Length: 425 Download |
MTNCNFIIVV KFFVTFLIFV SPNKILAFYD RFYGYAEEPM GPSFSYEVFD VSTFGASPNA 60 DTDNTLAFEK TWWAACNHQG RSKFYVPEGR FLVGEIQFKG PCRTESTMEV EITGDLIAPT 120 GIKDFPSNQW IGFSQLNDIF LYGSTNLDGR GDVEAWKQKS CEDSKCDKLI TSLSLDNVSN 180 SIIENISLSN AKGFHFRLHS ASNVTVHNVS ISSPWDSPNT DGIHVHNSSF IYITNSTIGA 240 GDDCVSISTG SLDVLVSGTH CGPGHGFSIG SLGKVKNEEE VRRIKFQNCT VNGADNGVRI 300 KTWPTSPPSE ASDITFEDIL MINVSNPIII DQEYCPSNSC NTTSASLVKL SNIEFKNIRG 360 TYRSDFGVNL RCSSVVACEN ITLIDVNLNG TNSTYKTPKE KWEQEKFSTK GSLNGLAVFN 420 STFN* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-71 | 4 | 422 | 426 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 4.0e-72 | 48 | 397 | 353 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-73 | 51 | 396 | 351 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 8.0e-80 | 76 | 394 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-100 | 49 | 388 | 343 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 1 | 388 | 1 | 395 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 48 | 423 | 489 | 863 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 48 | 423 | 31 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 48 | 423 | 70 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 1 | 388 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 3e-18 | 178 | 396 | 112 | 329 | A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine 2-Epimerase |
PDB | 1ib4_A | 3e-18 | 178 | 396 | 112 | 329 | A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine 2-Epimerase |
PDB | 1ia5_A | 3e-18 | 178 | 396 | 112 | 329 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.000000000000002 | 141 | 358 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000005 | 183 | 396 | 113 | 327 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |