| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037676 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 42259.2 Isoelectric Point: 10.1261 |
| Chromosome | Chromosome/Scaffold: 04 Start: 18224214 End: 18225688 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 382 | 0 |
| WKAACRSAASVTVTVPRGSFLLKPVEFRGPCRSRITFLIDGTIVAPSDYRGLGNSGYWILFVEVNRISINGGTLDARGASFWACRKSGKSCPGGARSMTF NWANDVVVSGLTSINSQVTHLVINSCNNVVVRKVKLVAPDQSPNTDGLHVQASTGVTVTDSTFQTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRD ANEAGVQNITLINSVFSGSDNGVRIKTWARQSTGFVRNILFQNLVMKNVQNPIIVDQNYCPNHQGCPKQGSGVKISQVVYRNIQGTSRTQQALTFDCSRS NPCQAIRLHDIKLTFNGRSATSTCKNIKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MDHTNNKLVA ALLMFFSSFL LMGTSMAASN YNVVNFGAKP DGRTDSTKAF LSAWKAACRS 60 AASVTVTVPR GSFLLKPVEF RGPCRSRITF LIDGTIVAPS DYRGLGNSGY WILFVEVNRI 120 SINGGTLDAR GASFWACRKS GKSCPGGARS MTFNWANDVV VSGLTSINSQ VTHLVINSCN 180 NVVVRKVKLV APDQSPNTDG LHVQASTGVT VTDSTFQTGD DCISIGPGTR NLYMSKLNCG 240 PGHGISIGSL GRDANEAGVQ NITLINSVFS GSDNGVRIKT WARQSTGFVR NILFQNLVMK 300 NVQNPIIVDQ NYCPNHQGCP KQGSGVKISQ VVYRNIQGTS RTQQALTFDC SRSNPCQAIR 360 LHDIKLTFNG RSATSTCKNI KGVKAGVVMP QGCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 1.0e-92 | 30 | 382 | 360 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-99 | 27 | 391 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-105 | 33 | 394 | 371 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-108 | 31 | 393 | 369 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-176 | 27 | 394 | 369 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181917.1 | 0 | 5 | 394 | 3 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 12 | 394 | 10 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 7 | 394 | 3 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529096.1 | 0 | 5 | 394 | 3 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529098.1 | 0 | 13 | 394 | 7 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-20 | 55 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-20 | 55 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-20 | 55 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-20 | 55 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-20 | 55 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
