| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037677 |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 40152.6 Isoelectric Point: 10.996 |
| Chromosome | Chromosome/Scaffold: 04 Start: 18220516 End: 18221903 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 28 | 356 | 0 |
| SLACRSRARAMVYIPRGTYLVRNLVFWGPCKSHITFKIDGTLVAPSNYWSIGNSGYWILFAKVNRISVSGGTIDARGAGYWSCRKNGGHCPQGARSMSFS WCNNVRLSGLTSLNSQNMHVTVHHSSNVRIQNIRIRAPSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLGDYV NEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVRNVVFRNLIMRNVDNPVIIDQNYCPNGRGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSRSN HCTGIRLQDIRLTYMRRSSASYCRNVHGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MPSFNVQRYG ARGDGRTDST KPFLTAWSLA CRSRARAMVY IPRGTYLVRN LVFWGPCKSH 60 ITFKIDGTLV APSNYWSIGN SGYWILFAKV NRISVSGGTI DARGAGYWSC RKNGGHCPQG 120 ARSMSFSWCN NVRLSGLTSL NSQNMHVTVH HSSNVRIQNI RIRAPSGSPN TDGIHVQSSS 180 GVTISGGTIA TGDDCIALSQ GSRNIWIERV NCGPGHGISI GSLGDYVNEE GVQNVTVTSS 240 VFTKTQNGVR IKTWARPSRG FVRNVVFRNL IMRNVDNPVI IDQNYCPNGR GCPRQSSGVK 300 ISGVTFANIK GTSTTPIAMK LDCSRSNHCT GIRLQDIRLT YMRRSSASYC RNVHGRRSGV 360 VIPRNCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-82 | 3 | 364 | 369 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-87 | 31 | 354 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-94 | 4 | 367 | 372 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-102 | 2 | 366 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 9.0e-150 | 4 | 367 | 365 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181916.1 | 0 | 1 | 367 | 28 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002275740.1 | 0 | 3 | 367 | 26 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002331633.1 | 0 | 3 | 367 | 26 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 3 | 367 | 26 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529095.1 | 0 | 3 | 367 | 25 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-22 | 95 | 312 | 75 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-22 | 95 | 312 | 75 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-22 | 95 | 312 | 75 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-22 | 95 | 312 | 75 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-22 | 95 | 312 | 75 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES984224 | 176 | 193 | 368 | 0 |
| CK276500 | 271 | 3 | 273 | 0 |
| DY281549 | 315 | 3 | 315 | 0 |
| JZ193571 | 286 | 3 | 287 | 0 |
| JZ194028 | 288 | 63 | 350 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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