| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037678 |
| Family | GH28 |
| Protein Properties | Length: 389 Molecular Weight: 41585.5 Isoelectric Point: 8.8893 |
| Chromosome | Chromosome/Scaffold: 04 Start: 18213732 End: 18215475 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 374 | 0 |
| ETACASSRPVTIVVPKGRFLLRSLNFDGSKCKPKPITFRIDGTLVAPADYRVIGNEDYWILFQHLDGVTVYGYGGVLDAQGTSLWGCKTSGKNCPRGATT IGFQSSRNIVVYGLTSLNSQMFHVVINGCHNVKLQGVKVLAAGNSPNTDGIHVQSSSTVSIFSTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSL GKDAVESGVQNVTVKTVTFTGTQNGARIKSWARPSSGFARNIRFQHCVMNNVDNPIIIDQNYCPRSENCPRQVSGIKISDVLFVDIHGTSATEVGVRLNC SPKKPCTGIRLKDVKLKYRNKPAASACVH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 389 Download |
| MASLLFLFVF FFSISSCFAH SYNVLSFGAK PDGKTDATNE FMAVWETACA SSRPVTIVVP 60 KGRFLLRSLN FDGSKCKPKP ITFRIDGTLV APADYRVIGN EDYWILFQHL DGVTVYGYGG 120 VLDAQGTSLW GCKTSGKNCP RGATTIGFQS SRNIVVYGLT SLNSQMFHVV INGCHNVKLQ 180 GVKVLAAGNS PNTDGIHVQS SSTVSIFSTK ISTGDDCVSI GPGTNGLWIE NVACGPGHGI 240 SIGSLGKDAV ESGVQNVTVK TVTFTGTQNG ARIKSWARPS SGFARNIRFQ HCVMNNVDNP 300 IIIDQNYCPR SENCPRQVSG IKISDVLFVD IHGTSATEVG VRLNCSPKKP CTGIRLKDVK 360 LKYRNKPAAS ACVHAGGIEA GLFQPNCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-86 | 49 | 368 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-86 | 23 | 387 | 370 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 9.0e-91 | 24 | 385 | 369 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-106 | 20 | 372 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-138 | 22 | 388 | 369 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 1 | 388 | 1 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 19 | 388 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 1 | 388 | 1 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 19 | 388 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 3 | 388 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-24 | 114 | 361 | 118 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 3e-16 | 59 | 339 | 28 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1rmg_A | 0.00000000000001 | 23 | 361 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1czf_B | 0.0000000000003 | 113 | 369 | 97 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.0000000000003 | 113 | 369 | 97 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
