y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra037679 |
Family | GH28 |
Protein Properties | Length: 326 Molecular Weight: 34266.3 Isoelectric Point: 7.6598 |
Chromosome | Chromosome/Scaffold: 04 Start: 18206935 End: 18212048 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 252 | 0 |
AWEAACASPNPTTIIVPKGRFLVGNLVFQGNKCTNAPISFRIAGSIIAPEDFRVIASSLQWIMFNGVTNVSIYGGVLDAQGSSLWKCKNSGGKKCPTGAK TLLFTDSNNISIYGLTSINSQKFHIVIDQSNNVKIDGVKVSADADSPNTDGIHIGKSHSVNITNSRIGTGDDCISIGPGSTHVSIQGIQCGPGHGI |
Full Sequence |
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Protein Sequence Length: 326 Download |
MIHKTSGLLL LPLTLIFLDF ILISSLANPT PITSLNVLTY GAKPDGSKDS TKAFLAAWEA 60 ACASPNPTTI IVPKGRFLVG NLVFQGNKCT NAPISFRIAG SIIAPEDFRV IASSLQWIMF 120 NGVTNVSIYG GVLDAQGSSL WKCKNSGGKK CPTGAKTLLF TDSNNISIYG LTSINSQKFH 180 IVIDQSNNVK IDGVKVSADA DSPNTDGIHI GKSHSVNITN SRIGTGDDCI SIGPGSTHVS 240 IQGIQCGPGH GIRYEDIQGT SNTEVAVMLD CSKDKPCTDI VMGNVNLVLQ MVNGSAQASC 300 NNANGLANDV VVPFTPCLKR DLLLT* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-5 | 252 | 320 | 69 | + polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-8 | 192 | 303 | 127 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-47 | 33 | 252 | 226 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-57 | 33 | 256 | 234 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-60 | 35 | 252 | 218 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181914.1 | 0 | 19 | 266 | 18 | 270 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181914.1 | 4e-24 | 252 | 325 | 335 | 405 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181915.1 | 0 | 15 | 252 | 5 | 237 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_191544.2 | 0 | 34 | 268 | 22 | 254 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_191544.2 | 0.002 | 252 | 305 | 325 | 376 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 0.0000005 | 36 | 285 | 22 | 241 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.000004 | 124 | 252 | 109 | 253 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000008 | 130 | 265 | 77 | 212 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000008 | 130 | 265 | 77 | 212 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000008 | 130 | 265 | 77 | 212 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |