| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037680 |
| Family | GH28 |
| Protein Properties | Length: 497 Molecular Weight: 53089.7 Isoelectric Point: 8.2854 |
| Chromosome | Chromosome/Scaffold: 04 Start: 18200384 End: 18208417 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 254 | 0 |
| WQVACASPNPTTIIVPKGRFLVRNLVFQGNKCTNAPISFRIAGSIIAPEDFRVIASSLQWIMFDGVTNVSIYGGVLDAQGSSLWKCKNSGGKKCPTGAKT LLFTDSNNISIYGLTSINSQKFHIVIDQSNNVKIDGVKVSADADSPNTDGIHIGKSHSVNITNSRIGTGDDCISIGPGSTHVSIQGIQCGPGHGISI | |||
| GH28 | 252 | 476 | 0 |
| ISIYGLTSINSQKFHIVIDQSNNVKIDGVKVSADADSPNTDGIHIGKSHSVNITNSRIGTGDDCISIGPGSTHVSIQGIQCGPGHGISIGSLGRSEDEQG VENVLVSNVDFTSTDNGVRIKTWGKYSKSFVRNIVFQHIKMKMVKNPIIINQHYCLDKPCPKKESGVEISNVRYEDIQGTSNTEVAVMLDCSREKPCTDI VMRNVNLVLQRINGSAQASCNNANG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 497 Download |
| MIHKTSCLLL LPLTLIFLDF ILISSLAKPT PITSLNVLTY GAKPDGLKDS TKAFLAAWQV 60 ACASPNPTTI IVPKGRFLVR NLVFQGNKCT NAPISFRIAG SIIAPEDFRV IASSLQWIMF 120 DGVTNVSIYG GVLDAQGSSL WKCKNSGGKK CPTGAKTLLF TDSNNISIYG LTSINSQKFH 180 IVIDQSNNVK IDGVKVSADA DSPNTDGIHI GKSHSVNITN SRIGTGDDCI SIGPGSTHVS 240 IQGIQCGPGH GISIYGLTSI NSQKFHIVID QSNNVKIDGV KVSADADSPN TDGIHIGKSH 300 SVNITNSRIG TGDDCISIGP GSTHVSIQGI QCGPGHGISI GSLGRSEDEQ GVENVLVSNV 360 DFTSTDNGVR IKTWGKYSKS FVRNIVFQHI KMKMVKNPII INQHYCLDKP CPKKESGVEI 420 SNVRYEDIQG TSNTEVAVML DCSREKPCTD IVMRNVNLVL QRINGSAQAS CNNANGLAND 480 VVVPFTPCLK RDMLLI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-41 | 62 | 264 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-55 | 33 | 305 | 280 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 7.0e-64 | 33 | 484 | 456 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-72 | 253 | 474 | 222 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-75 | 256 | 474 | 221 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 15 | 257 | 5 | 242 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_181914.1 | 0 | 1 | 264 | 1 | 262 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181914.1 | 0 | 252 | 495 | 164 | 404 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 15 | 257 | 5 | 242 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 252 | 484 | 151 | 381 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-18 | 244 | 458 | 154 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1bhe_A | 0.0000007 | 124 | 254 | 109 | 255 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.000000000000001 | 271 | 458 | 129 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_F | 0.000005 | 130 | 254 | 77 | 201 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000001 | 271 | 458 | 129 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
