| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037739 |
| Family | CE8 |
| Protein Properties | Length: 517 Molecular Weight: 56252.1 Isoelectric Point: 8.6457 |
| Chromosome | Chromosome/Scaffold: 04 Start: 17938073 End: 17940585 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 212 | 498 | 0 |
| AVVAADGSGTHKTVGEALLATSLASSGGRTVIHLKAGTYKENINIPTKQKNVMLVGDGKGRTVIVGSRSNRDGYTTYKTATVAAMGDGFIARDITIVNSA GPSSEQAVALRVGADKSVVYRCSIEGYQDSLYTHSKRQFYRDTDITGTVDYIFGNSAAVFQSCNIVARKPLSGQTNFVTAQGRSNPGQNTGISIQNCKIT AQSTTYLGRPWKEYSRTVVMQSFLDGSIHPSGWSPWSGGFGLKTLFYGEFGNSGPGSSVSGRVKWAGYHSSLTVKEAEGFTVANFIG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 517 Download |
| MASSSAISNH RITKTLMTLL IINFLYQIQT TSAVTNSNSY SHFSRFTRHQ SSSSRTKQGF 60 LASIQESMNH ALRARSLAFN LTLSHRTAEL HIVDPIHDCL ELLDDTLEML SRITSSDDEE 120 DVHTWLSATL TNQDTCEQSL QEKSNSYKHG VAMDFVARNL SGLLTNALEL FVSVKSKPQR 180 LLSEHEHFPR FVTSSEDRRL LEAPVEELKI DAVVAADGSG THKTVGEALL ATSLASSGGR 240 TVIHLKAGTY KENINIPTKQ KNVMLVGDGK GRTVIVGSRS NRDGYTTYKT ATVAAMGDGF 300 IARDITIVNS AGPSSEQAVA LRVGADKSVV YRCSIEGYQD SLYTHSKRQF YRDTDITGTV 360 DYIFGNSAAV FQSCNIVARK PLSGQTNFVT AQGRSNPGQN TGISIQNCKI TAQSTTYLGR 420 PWKEYSRTVV MQSFLDGSIH PSGWSPWSGG FGLKTLFYGE FGNSGPGSSV SGRVKWAGYH 480 SSLTVKEAEG FTVANFIGGT MWLPSTGVSF DSGLVK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02314 | PLN02314 | 5.0e-142 | 51 | 514 | 500 | + pectinesterase | ||
| PLN02484 | PLN02484 | 1.0e-150 | 64 | 514 | 484 | + probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 4.0e-164 | 98 | 514 | 437 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 2.0e-180 | 211 | 499 | 298 | + Pectinesterase. | ||
| PLN02170 | PLN02170 | 0 | 1 | 515 | 534 | + probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK69695.1 | 0 | 42 | 515 | 32 | 549 | putative pectin methylesterase LuPME1 [Linum usitatissimum] |
| EMBL | CBI39447.1 | 0 | 179 | 515 | 99 | 431 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_181833.1 | 0 | 1 | 515 | 1 | 517 | ATPMEPCRD; enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
| RefSeq | NP_191460.1 | 0 | 39 | 515 | 37 | 529 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002527752.1 | 0 | 121 | 515 | 174 | 582 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xg2_A | 0 | 211 | 514 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1gq8_A | 0 | 211 | 514 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_B | 3e-17 | 215 | 505 | 12 | 340 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntq_A | 3e-17 | 215 | 505 | 12 | 340 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 2ntp_B | 3e-17 | 215 | 505 | 12 | 340 | A Chain A, Pectin Methylesterase From Carrot |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
