| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra037795 |
| Family | CBM43 |
| Protein Properties | Length: 486 Molecular Weight: 53924.9 Isoelectric Point: 5.9039 |
| Chromosome | Chromosome/Scaffold: 09 Start: 3624410 End: 3626857 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 369 | 449 | 8.8e-24 |
| WCVVNKDTINLDEVGPDLDYACYHGDCTAMLYGSTCSNLDKIQNISYAFNMFFQIQGQDVRACDFRGSAMITKNNASVGSC | |||
| GH17 | 29 | 347 | 0 |
| GVNWGNIASHPLNPDIVVRMLKENKINKVKLFDADSWTMNALAGSGMEVMVGIPNNLLETLADDYGNAKDWVKENITAYMRKDGVNIKYVAVGNEPFLSA YNGSYLKTTFPALKNIHRALKEAGHTDVMKATIPQNAEVYESANDKPSEGDFRSDVKQIMLDIVKFFHDNDLPFTVNIYPFLSLYLNQHFPVEYAFFDGN GQTIPDNGKNYDNVFDANYDTLVYALNKAGIKDMKIIVGEVGWPTDGHKYATPKLAEKFYAGLMKRLAKDVGTPLRPEKLEVYLFGLLDEDMKSILPGPF ERHWGIFRYDGTPKFMLDF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 486 Download |
| MAGRAAMLVN LGTVVMTVLT LASFVEGFGV NWGNIASHPL NPDIVVRMLK ENKINKVKLF 60 DADSWTMNAL AGSGMEVMVG IPNNLLETLA DDYGNAKDWV KENITAYMRK DGVNIKYVAV 120 GNEPFLSAYN GSYLKTTFPA LKNIHRALKE AGHTDVMKAT IPQNAEVYES ANDKPSEGDF 180 RSDVKQIMLD IVKFFHDNDL PFTVNIYPFL SLYLNQHFPV EYAFFDGNGQ TIPDNGKNYD 240 NVFDANYDTL VYALNKAGIK DMKIIVGEVG WPTDGHKYAT PKLAEKFYAG LMKRLAKDVG 300 TPLRPEKLEV YLFGLLDEDM KSILPGPFER HWGIFRYDGT PKFMLDFTGQ GRKIVPVAAK 360 GVQYLDKQWC VVNKDTINLD EVGPDLDYAC YHGDCTAMLY GSTCSNLDKI QNISYAFNMF 420 FQIQGQDVRA CDFRGSAMIT KNNASVGSCL FPIQIVSGSG DFRISYVFGR FIVAGLILLG 480 LVAAI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0001 | 264 | 338 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 3.0e-17 | 368 | 438 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 9.0e-31 | 368 | 451 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-66 | 29 | 347 | 321 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62816.1 | 0 | 1 | 457 | 1 | 456 | hypothetical protein [Vitis vinifera] |
| RefSeq | NP_201284.1 | 0 | 1 | 465 | 1 | 465 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002275701.1 | 0 | 1 | 457 | 1 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310612.1 | 0 | 4 | 478 | 3 | 479 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530257.1 | 0 | 7 | 457 | 8 | 457 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ur8_B | 0 | 26 | 347 | 1 | 314 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| PDB | 3ur8_A | 0 | 26 | 347 | 1 | 314 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| PDB | 3ur7_B | 0 | 26 | 347 | 1 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 3ur7_A | 0 | 26 | 347 | 1 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
| PDB | 4gzj_A | 0 | 26 | 347 | 1 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
