| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra038049 |
| Family | CE8 |
| Protein Properties | Length: 738 Molecular Weight: 83098.9 Isoelectric Point: 9.5332 |
| Chromosome | Chromosome/Scaffold: 08 Start: 6917469 End: 6920805 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 427 | 722 | 0 |
| NVVVAKDGSGKCKTIKQALAMVPMKNRRKFVIYIKQGVYKEKIEVTKKMKNVMFVGDGPTKTIITGNVAFLPDRIGTYRTSTVAVNGDYFMAKDIGFENT AGAARHQAVALRVSADFAVFFNCHMNGYQDTLYVHTHRQFYRDCRISGTIDFVFGDAKAVFQNCEFVIRRPMDNQQCIVTAQGRKDRRETTGIVIHNSRI TGDATYRPVKAKNRAFLGRPWKEYSRTIIMNTNIDDVIDPEGWLKWNETFALKTLFYSEYRNRGRGSGQARRVRWRGIRRISARQARGFAPGEFLR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 738 Download |
| MRNGWNDSSK MKRFAFLGIT SLFMTMALCA EADEGSSASR KTEEIHRGSK LMITKTAVSI 60 ICSSTDYKQE CIASLETVKS PDPRNLIRAA FDLAIISIRS GINRGMTDIE SRADADVRTR 120 DALNSCWELM DFAIDDLLKT RDTFKGFLFT RLSDFIDDLL VWLSGSVTYQ QTCIDGFEGI 180 DSIAAEIMEM VMRKGQHLTS NGLAIASNLD ALLKIFRIPI PFLRPGSGGL GIFRSDSPEE 240 QPLDSPEGSP QMGDSSDNQQ LDSSEVSPQM GDSSENQRLD SSKDSPPQNL NGPKKRPLDS 300 SENQPMDSYE NQPLDSSENQ SLDSSKYSPH NLDPSKNQQP DLSESRPSDS YTTQHLDSSR 360 NLPLDSSENT RQKLHSSESR PMDPLRALNP FGKLEDRHLS EEGGFPRWVT THSRRLLAAR 420 GRRIRANVVV AKDGSGKCKT IKQALAMVPM KNRRKFVIYI KQGVYKEKIE VTKKMKNVMF 480 VGDGPTKTII TGNVAFLPDR IGTYRTSTVA VNGDYFMAKD IGFENTAGAA RHQAVALRVS 540 ADFAVFFNCH MNGYQDTLYV HTHRQFYRDC RISGTIDFVF GDAKAVFQNC EFVIRRPMDN 600 QQCIVTAQGR KDRRETTGIV IHNSRITGDA TYRPVKAKNR AFLGRPWKEY SRTIIMNTNI 660 DDVIDPEGWL KWNETFALKT LFYSEYRNRG RGSGQARRVR WRGIRRISAR QARGFAPGEF 720 LRGNAWITKR RIPYNAY* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02745 | PLN02745 | 2.0e-18 | 57 | 224 | 174 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02990 | PLN02990 | 2.0e-39 | 4 | 218 | 217 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02745 | PLN02745 | 1.0e-128 | 390 | 728 | 349 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02990 | PLN02990 | 7.0e-148 | 391 | 736 | 346 | + Probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 0 | 427 | 724 | 299 | + Pectinesterase. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF63815.1 | 1e-22 | 54 | 213 | 47 | 206 | pectin methylesterase, putative [Arabidopsis thaliana] |
| GenBank | AAF63815.1 | 0 | 389 | 736 | 210 | 560 | pectin methylesterase, putative [Arabidopsis thaliana] |
| RefSeq | NP_193333.1 | 0 | 11 | 736 | 1 | 700 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199729.1 | 2e-31 | 56 | 218 | 53 | 217 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_199729.1 | 0 | 391 | 734 | 224 | 566 | pectinesterase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 427 | 735 | 8 | 316 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 424 | 734 | 1 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 3e-27 | 427 | 671 | 5 | 281 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 3e-27 | 427 | 671 | 5 | 281 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 3e-27 | 427 | 671 | 5 | 281 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
