| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra038160 |
| Family | CE8 |
| Protein Properties | Length: 362 Molecular Weight: 40786.6 Isoelectric Point: 9.8212 |
| Chromosome | Chromosome/Scaffold: 000140 Start: 207519 End: 209914 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 41 | 324 | 0 |
| VVVSHRGTGDFRTIQAAIDSIPSNNNNWIKIYLKHGTYNEKIVIEKQMIVMQGNDASKVTIQYNDAGLANSSGPFRLNAEYFVAINITFKNTYNNIKQTV PYKDIKVAPSAILMADKASFYGCRFISVQDTLADLLGRHYFHKCYIEGAVDFIWGRGQSIYQNCVINVKGVTSKKMVNNREMLAGFITAQGRESEQDTSG FVFNKCVIKGTGKAFLGRAYRGYSRVVFYGTHMSNVVVPQGWDAWHYKGQEDKFTFVEVNSTGKGANKKGRVRWEKNLSAKEVD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 362 Download |
| MKYLTTALAL SFLYLFTDTS SHFSSGGLDM KYFNKDRVKT VVVSHRGTGD FRTIQAAIDS 60 IPSNNNNWIK IYLKHGTYNE KIVIEKQMIV MQGNDASKVT IQYNDAGLAN SSGPFRLNAE 120 YFVAINITFK NTYNNIKQTV PYKDIKVAPS AILMADKASF YGCRFISVQD TLADLLGRHY 180 FHKCYIEGAV DFIWGRGQSI YQNCVINVKG VTSKKMVNNR EMLAGFITAQ GRESEQDTSG 240 FVFNKCVIKG TGKAFLGRAY RGYSRVVFYG THMSNVVVPQ GWDAWHYKGQ EDKFTFVEVN 300 STGKGANKKG RVRWEKNLSA KEVDFLLNPQ TFVDNDGWMA TLPSALVSLY YNHLQSLSFR 360 I* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 2.0e-75 | 36 | 323 | 300 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 1.0e-75 | 39 | 339 | 304 | + Probable pectinesterase | ||
| PLN02682 | PLN02682 | 9.0e-78 | 26 | 339 | 342 | + pectinesterase family protein | ||
| PLN02176 | PLN02176 | 3.0e-86 | 39 | 343 | 308 | + putative pectinesterase | ||
| PLN02497 | PLN02497 | 1.0e-100 | 39 | 343 | 309 | + probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI40838.1 | 0 | 40 | 343 | 44 | 341 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002263748.1 | 0 | 40 | 343 | 31 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002318946.1 | 0 | 9 | 343 | 8 | 338 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330032.1 | 0 | 40 | 343 | 38 | 323 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512520.1 | 0 | 38 | 328 | 30 | 316 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 3e-33 | 41 | 346 | 9 | 317 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-25 | 38 | 314 | 2 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-20 | 41 | 334 | 33 | 360 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.0000000000002 | 51 | 343 | 18 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.0000000000002 | 51 | 343 | 18 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
