| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra038314 |
| Family | CBM43 |
| Protein Properties | Length: 227 Molecular Weight: 22425 Isoelectric Point: 7.9149 |
| Chromosome | Chromosome/Scaffold: 02 Start: 11329039 End: 11331900 |
| Description | plasmodesmata callose-binding protein 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM43 | 33 | 113 | 1.9e-27 |
| CVCKDGNEQVLQKAIDYACGAGADCTQIQLNGACYQPNTIKNHCDVAVNSYYQKKASSGATCDFNGAAVISNSPPSTASSC | |||
| Full Sequence |
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| Protein Sequence Length: 227 Download |
| MIVRILTPGS GGFHSACFAG YGSGIRRLNA AYCVCKDGNE QVLQKAIDYA CGAGADCTQI 60 QLNGACYQPN TIKNHCDVAV NSYYQKKASS GATCDFNGAA VISNSPPSTA SSCLSGSSSS 120 GTPSTGTPKS GTPSTGTPTS GTPTSGFPST GTPSTGNPTS GMPNTVTPST STGMPTSSSS 180 SVFPGTTLGP VGSGGLGDPN AGVMLSDRTN TVFFILAGVV MLVMMG* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07983 | X8 | 9.0e-18 | 32 | 101 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 2.0e-28 | 32 | 104 | 74 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAG52501.1 | 0 | 29 | 208 | 18 | 205 | AC018364_19 unknown protein; 45065-49536 [Arabidopsis thaliana] |
| GenBank | AAM62861.1 | 0 | 29 | 225 | 18 | 222 | unknown [Arabidopsis thaliana] |
| DDBJ | BAD43464.1 | 0 | 29 | 194 | 18 | 191 | predicted GPI-anchored protein [Arabidopsis thaliana] |
| RefSeq | NP_173968.1 | 0 | 29 | 208 | 18 | 180 | beta-1,3-glucanase-related [Arabidopsis thaliana] |
| RefSeq | NP_564957.1 | 0 | 29 | 225 | 18 | 222 | PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4); callose binding / polysaccharide binding [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jon_A | 0.0000000000003 | 31 | 108 | 12 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EX085840 | 81 | 23 | 103 | 1.00053e-42 |
| EX038641 | 74 | 29 | 102 | 1.99965e-42 |
| EW726615 | 81 | 23 | 103 | 1.99965e-42 |
| CV546015 | 80 | 23 | 102 | 1.99965e-42 |
| EX085840 | 27 | 188 | 214 | 0.005 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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