| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra038506 |
| Family | PL4 |
| Protein Properties | Length: 676 Molecular Weight: 77305.8 Isoelectric Point: 7.3733 |
| Chromosome | Chromosome/Scaffold: 09 Start: 4983957 End: 4989608 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 55 | 654 | 0 |
| VSNEKVVVDNGIIQVTFSSPQGLITGIKYNGIDNVLDDEIDDRGYWDIVWYEPEKALEIDKLEGTKFEIITQNEEQVEISFTRTWTISKRGSLVPLNVDK RYIIRTGVSGIYMYGILERLEGWPDVDMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRDNAKILAYKEAVLLTNPKNPMFKGEVDDKYMYSMEDKDN NVHGWISSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFTSTHYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWKDAKRQMAVEV RSWPYDFVNSEDYPLSHQRGTIEGQFYIKDRYVSRLNIYGKFAFVGLAPCGEAGSWQTESKGYQFWTKADRKGRFIIDNVRAGNYSLYAWGYGFIGDYKY EQNITITPGSQMNVGPLVYEPPRNGPTLWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQNDLVYTVGVSDYKRDWFFAHVT RNVGNNTYDSTTWQIIFNLENVNRVGLYTLRIALASAADSELQVRVNNPKSDHIFTTGLIGKDNAIARHGIHGLYRLYSINVAGDLLSVGDNTIYLTQSR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 676 Download |
| MKLGAPRKKS GWVMLQVLLL HLLVQSVHSQ NSRNKLNITN PGQSIPGLAV QLRRVSNEKV 60 VVDNGIIQVT FSSPQGLITG IKYNGIDNVL DDEIDDRGYW DIVWYEPEKA LEIDKLEGTK 120 FEIITQNEEQ VEISFTRTWT ISKRGSLVPL NVDKRYIIRT GVSGIYMYGI LERLEGWPDV 180 DMDQIRIVFK LNPKKFDFMA ISDDRQRSMP SMADRDNAKI LAYKEAVLLT NPKNPMFKGE 240 VDDKYMYSME DKDNNVHGWI SSDPPVGFWM ITPSDEFRLG GPIKQDLTSH AGPITLSMFT 300 STHYAGKEMR MDYRNGEPWK KVFGPVLAYL NSVSPKDSTL RLWKDAKRQM AVEVRSWPYD 360 FVNSEDYPLS HQRGTIEGQF YIKDRYVSRL NIYGKFAFVG LAPCGEAGSW QTESKGYQFW 420 TKADRKGRFI IDNVRAGNYS LYAWGYGFIG DYKYEQNITI TPGSQMNVGP LVYEPPRNGP 480 TLWEIGVPDR TAGEFYIPDP YPTLMNKLYV NPLQDRFRQY GLWDRYADLY PQNDLVYTVG 540 VSDYKRDWFF AHVTRNVGNN TYDSTTWQII FNLENVNRVG LYTLRIALAS AADSELQVRV 600 NNPKSDHIFT TGLIGKDNAI ARHGIHGLYR LYSINVAGDL LSVGDNTIYL TQSRSVGPFQ 660 GVMYDYIRLE SPFTT* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13620 | CarboxypepD_reg | 0.009 | 411 | 468 | 58 | + Carboxypeptidase regulatory-like domain. | ||
| cd10316 | RGL4_M | 4.0e-28 | 372 | 471 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-52 | 483 | 670 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 5.0e-82 | 54 | 339 | 292 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-94 | 32 | 241 | 214 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAS99719.1 | 0 | 1 | 675 | 1 | 677 | At2g22620 [Arabidopsis thaliana] |
| RefSeq | NP_179847.1 | 0 | 1 | 675 | 1 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | NP_195508.2 | 0 | 1 | 672 | 1 | 675 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 47 | 675 | 44 | 674 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527245.1 | 0 | 60 | 675 | 2 | 621 | lyase, putative [Ricinus communis] |
