| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra038614 |
| Family | PL1 |
| Protein Properties | Length: 414 Molecular Weight: 45822.2 Isoelectric Point: 6.4104 |
| Chromosome | Chromosome/Scaffold: 06 Start: 14193563 End: 14195523 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 130 | 330 | 0 |
| LWIIFSRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTDVRDSPEHYGWRTISDGDGVSIFGGSHVWVDHCSLS NCNDGLIDAIRGSTAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFL A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 414 Download |
| MNTMLNSSHA SFALIFLYCI FFFALALSSP VSDPELIVEE VHRKINESIS RRNLGYFSCE 60 TGNPIDDCWR CDKDWEKNRK RLADCGIGFG KNAIGGRDGE IYVVTDPGND DPVNPKPGTL 120 RYAVIQDEPL WIIFSRDMTI QLKEELIMNS FKTLDGRGAS VHISGGPCIT IQYVTNIIIH 180 GLHIHDCKQG GNTDVRDSPE HYGWRTISDG DGVSIFGGSH VWVDHCSLSN CNDGLIDAIR 240 GSTAITISNN YLTHHNKVML LGHSDTYEQD KNMQVTIAFN HFGEGLVQRM PRCRHGYFHV 300 VNNDYTHWEM YAIGGSANPT INSQGNRFLA PDNSFSKEVT KHEDAPESEW SRWNWRSEGD 360 LMLNGAFFTL SGAGPTKSSS YSRASSLAAR PSSNVGEITI SSGALSCKKG SHC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-27 | 150 | 328 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 5.0e-72 | 143 | 328 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-80 | 137 | 332 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU21247.1 | 0 | 24 | 413 | 19 | 406 | unknown [Glycine max] |
| DDBJ | BAB10560.1 | 0 | 4 | 413 | 1 | 410 | pectate lyase [Arabidopsis thaliana] |
| DDBJ | BAE48664.1 | 0 | 25 | 413 | 26 | 413 | Pectate lyase [Prunus mume] |
| RefSeq | NP_568967.1 | 0 | 2 | 413 | 21 | 432 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002322215.1 | 0 | 24 | 413 | 18 | 403 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 63 | 406 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 63 | 406 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-18 | 132 | 330 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jta_A | 0.000000000000002 | 176 | 374 | 115 | 327 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1jrg_B | 0.000000000000002 | 176 | 374 | 115 | 327 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
