y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra038618 |
Family | CBM43 |
Protein Properties | Length: 114 Molecular Weight: 12823.5 Isoelectric Point: 4.8684 |
Chromosome | Chromosome/Scaffold: 06 Start: 14207074 End: 14207415 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 28 | 109 | 1e-32 |
WCMAMPNASDEQLQANIDYACSNGVDCTQIQPGGVCYEPNTLYDHASYVMNAYYQSHGRIEDSCRFNRSSCWVFVDPSYGSC |
Full Sequence |
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Protein Sequence Length: 114 Download |
MSSKLLTFFF VLSLVAIHQI PVVTCRQWCM AMPNASDEQL QANIDYACSN GVDCTQIQPG 60 GVCYEPNTLY DHASYVMNAY YQSHGRIEDS CRFNRSSCWV FVDPSYGSCV YYT* 120 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-23 | 27 | 96 | 75 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 8.0e-40 | 27 | 111 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB10565.1 | 2e-38 | 15 | 91 | 13 | 89 | unnamed protein product [Arabidopsis thaliana] |
DDBJ | BAB10565.1 | 0 | 26 | 113 | 91 | 178 | unnamed protein product [Arabidopsis thaliana] |
RefSeq | NP_001078788.1 | 0 | 1 | 113 | 1 | 110 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_200173.1 | 3e-38 | 1 | 111 | 1 | 110 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | NP_201128.2 | 0 | 15 | 113 | 13 | 111 | unknown protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 6e-28 | 28 | 111 | 13 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |