| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra038949 |
| Family | GT47 |
| Protein Properties | Length: 450 Molecular Weight: 51178.8 Isoelectric Point: 9.6165 |
| Chromosome | Chromosome/Scaffold: 08 Start: 8475734 End: 8478648 |
| Description | xylogalacturonan deficient 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 112 | 400 | 0 |
| NRFKVWTYTEGEAPLFHDGPVNDIYGIEGQFMDEMCVEGPMRSHFRADHPDDAHVYFVPFSVAKVIHFVYKPITSVEGFSRARLHRLIEDYVDVVATKYP FWNRSRGGDHFMVSCHDWAPDVIDGNPKLFERFIRGLCNANTSEGFRPNVDVSIPEIYLPKGKLGPSFLGKSPRVRSILAFFAGRTHGDIRKILFKHWKE KDSQVQVYERLPPGKDYTKLMGMSKFCLCPSGWEVASPREVEAIYAGCVPVIISDNYSLPFSDVLNWDSFSIQIPVSRISEIKTILESV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 450 Download |
| MSLLRQNNTA NTTLSPICPP PPPPLRQSNT TNSTLASVPF TSPVSDQDNQ EKSSSPTSKT 60 TFIRKRSGLN KLEADLAKAR AAIKRAASTQ NYSSSLYKNP AAFHQSHTEM MNRFKVWTYT 120 EGEAPLFHDG PVNDIYGIEG QFMDEMCVEG PMRSHFRADH PDDAHVYFVP FSVAKVIHFV 180 YKPITSVEGF SRARLHRLIE DYVDVVATKY PFWNRSRGGD HFMVSCHDWA PDVIDGNPKL 240 FERFIRGLCN ANTSEGFRPN VDVSIPEIYL PKGKLGPSFL GKSPRVRSIL AFFAGRTHGD 300 IRKILFKHWK EKDSQVQVYE RLPPGKDYTK LMGMSKFCLC PSGWEVASPR EVEAIYAGCV 360 PVIISDNYSL PFSDVLNWDS FSIQIPVSRI SEIKTILESV SLVRYLKMYK RVLEVKRHFV 420 LNRPAQPYDV MHMMLHSIWL RRLNLRLIT* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 9.0e-67 | 110 | 400 | 309 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK83577.1 | 0 | 110 | 449 | 1 | 341 | AT5g33290/F19N2_10 [Arabidopsis thaliana] |
| GenBank | ABA18105.1 | 0 | 64 | 447 | 27 | 421 | exostosin family protein [Capsella rubella] |
| GenBank | ABG48476.1 | 0 | 63 | 447 | 27 | 423 | At3g42180 [Arabidopsis thaliana] |
| RefSeq | NP_189804.4 | 0 | 63 | 447 | 72 | 468 | catalytic/ transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_198314.2 | 0 | 6 | 449 | 57 | 500 | XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic [Arabidopsis thaliana] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DN961964 | 215 | 101 | 315 | 0 |
| ES913631 | 219 | 232 | 450 | 0 |
| DK530961 | 209 | 242 | 450 | 0 |
| DK554378 | 197 | 254 | 450 | 0 |
| DK565402 | 195 | 256 | 450 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
