| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039081 |
| Family | PL1 |
| Protein Properties | Length: 413 Molecular Weight: 45574.2 Isoelectric Point: 7.1234 |
| Chromosome | Chromosome/Scaffold: 09 Start: 1225472 End: 1229016 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 133 | 331 | 0 |
| IIFKRDMVIKLQKELIITSFKTIDGRGASVHITDGPCLKIHEKTNIIIHGINIHDCKPGPGGMIRDGPDHTGMWIPSDGDAVAIFGGKNVWIDHCSLSNC DDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 413 Download |
| MFSYSSNPFV YTFIFLLSIG NRIAFSSSSS PQAQDPKLVV DEVNRSVFNA SRRSLAYLSC 60 RTGNPIDDCW RCDPNWDTNR QRLADCAIGF GKNAIGGRDG RIYVVTDPGN DDPVNPIPGT 120 LRHAVTQEEP LWIIFKRDMV IKLQKELIIT SFKTIDGRGA SVHITDGPCL KIHEKTNIII 180 HGINIHDCKP GPGGMIRDGP DHTGMWIPSD GDAVAIFGGK NVWIDHCSLS NCDDGLIDAI 240 HGSTAITISN NHMTHHDKVM LLGHSDSYTE DKNMQVTIAF NHFGEGLVQR MPRCRHGYFH 300 VVNNDYTHWE MYAIGGSASP TIYSQGNRFL APDTRFNKEV TKHEDAPESQ WRDWNWRSEG 360 DMLLNGAYFR QSGAGAPSTY ARASSLSARP SSLVGSITTT AGALSCRRGG HC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK06904 | PRK06904 | 0.009 | 16 | 56 | 42 | + replicative DNA helicase; Validated | ||
| COG3866 | PelB | 3.0e-28 | 145 | 329 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 3.0e-71 | 144 | 329 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 2.0e-81 | 138 | 333 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_189376.1 | 0 | 1 | 412 | 1 | 412 | pectate lyase family protein [Arabidopsis thaliana] |
| Swiss-Prot | Q9LTZ0 | 0 | 1 | 412 | 1 | 409 | PEL11_ARATH RecName: Full=Putative pectate lyase 11; Flags: Precursor |
| RefSeq | XP_002300069.1 | 0 | 10 | 412 | 6 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002318694.1 | 0 | 28 | 412 | 21 | 403 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526952.1 | 0 | 13 | 412 | 11 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 64 | 405 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 4e-17 | 121 | 331 | 38 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1bn8_A | 3e-16 | 126 | 405 | 126 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase |
| PDB | 2bsp_A | 7e-16 | 126 | 405 | 126 | 408 | A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FG606120 | 344 | 35 | 378 | 0 |
| HO778688 | 380 | 35 | 413 | 0 |
| DY278910 | 367 | 14 | 380 | 0 |
| DY272271 | 366 | 14 | 377 | 0 |
| DY267635 | 362 | 14 | 375 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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