| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra039138 |
| Family | GT5 |
| Protein Properties | Length: 772 Molecular Weight: 85123.1 Isoelectric Point: 6.7122 |
| Chromosome | Chromosome/Scaffold: 05 Start: 23800898 End: 23804033 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 301 | 764 | 0 |
| NVILVAAECAPFSKTGGLGDVAGALPKALARRGHRVMVVVPRYAEYEEAKDVGVRKRYKVAGQDMEVMYFHAYIDGVDFVFIDSPVFRHLSSNIYGGNRL DILKRMVLFCKAAVEVPWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGLMKYTRSVLVIHNIAHQGRGPVDDFSYVDLPGHYLDSFKLYDPV GGEHFNIFAAGLKAADRVLTVSHGYSWEFRGIVNGIDTKEWNPKFDLHLHSDDYTNYSLETLQIGKPQCKAALQKELGLPVRPDVPLIGFIGRLDHQKGV DLIAEAVPWMMSQDVQLVMLGTGRPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMNYGTIPVVHAVGGLRDTVQQ FDPYSETGLGWTFDSAEAGKLIHALGNCLLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 772 Download |
| MASVAESSYP LLCQIKSQRR VTSSTLRNSS LVRVSPPHFA SGSLSFRRRS FVLGHRWKFA 60 RCVEATGPDS SGSPSGDDEQ EDALQATIDK SKKVLDMQRN LLHQIAERRK LVSSIKESTP 120 NLVDGKPSAK EDANTADAAK NDKMDGDGNG SVSSSSYVKS SLNKEPEATT PLKSSKQSSP 180 SAKSPEKEKP SGVANNGKPW SSVVASSVDP PYKPSSTVTS SKKTSDPVTS SVNPSKSPAG 240 AFWSDPLPSY LTKTPETPSI KTEEYMETKE EMAHEEASSD TDEPSKDEEQ PPPLAGANVM 300 NVILVAAECA PFSKTGGLGD VAGALPKALA RRGHRVMVVV PRYAEYEEAK DVGVRKRYKV 360 AGQDMEVMYF HAYIDGVDFV FIDSPVFRHL SSNIYGGNRL DILKRMVLFC KAAVEVPWYV 420 PCGGVCYGDG NLAFIANDWH TALLPVYLKA YYRDHGLMKY TRSVLVIHNI AHQGRGPVDD 480 FSYVDLPGHY LDSFKLYDPV GGEHFNIFAA GLKAADRVLT VSHGYSWEFR GIVNGIDTKE 540 WNPKFDLHLH SDDYTNYSLE TLQIGKPQCK AALQKELGLP VRPDVPLIGF IGRLDHQKGV 600 DLIAEAVPWM MSQDVQLVML GTGRPDLEEV LRQMEHQYRD KARGWVGFSV KTAHRITAGA 660 DILLMPSRFE PCGLNQLYAM NYGTIPVVHA VGGLRDTVQQ FDPYSETGLG WTFDSAEAGK 720 LIHALGNCLL TYREYKESWE GLQRRGMTQD LSWDNAAEKY EEVLVAAKYQ W* 780 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-79 | 300 | 768 | 511 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 3.0e-127 | 300 | 762 | 493 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 6.0e-159 | 300 | 763 | 494 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 300 | 767 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 301 | 764 | 495 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV25894.1 | 0 | 8 | 771 | 6 | 751 | starch synthase isoform II [Manihot esculenta] |
| GenBank | ACL98479.1 | 0 | 70 | 771 | 59 | 757 | starch synthase IIa-1 precursor [Glycine max] |
| GenBank | ACL98480.1 | 0 | 24 | 771 | 37 | 774 | starch synthase IIa-2 precursor [Glycine max] |
| RefSeq | NP_186767.1 | 0 | 1 | 771 | 1 | 792 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002278470.1 | 0 | 43 | 771 | 59 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 300 | 766 | 10 | 510 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3vue_A | 0 | 300 | 766 | 10 | 510 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 300 | 763 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 300 | 770 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 300 | 770 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 474 | 772 | 0 |
| HO777841 | 196 | 287 | 482 | 0 |
| HO781048 | 394 | 399 | 772 | 0 |
| HO445868 | 438 | 355 | 772 | 0 |
| HO781048 | 38 | 362 | 399 | 0.027 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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